tmem38a (tmem38a,LOC107702305,LOC107730482,LOC107658508,LOC107751025)


Basic Information

Item Value
gene id tmem38a
gene name tmem38a,LOC107702305,LOC107730482,LOC107658508,LOC107751025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3752956 ~ 3759693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252331.1
AGGCATCTGCATGTGAACGGAGCCTTTTACTCGTACGCGCGGCGAGTCTCTAGAAGATCTGTTCATGCGGTAGGGGCATAACATCATGGAGGTGCTGGATGTCCTAAATCTGGGCGAAATTGCCCAGTATTTCTCGAAAATGGCGATGTTTCCAGTTTTTGATGTCGCTTATTATATCGTGTCAATACTCTACCTCAAATATGAACCAGGTGCTGTGGAAGTGTCCCGTAGAAGCCCAGTGGCCTCATGGCTTTGTGCAATGCTCTACTGCTTTGGAAGCTACATACTAGCAGACGTCATGCTTGGTGTGTCTCCCATTGACTATTTCCATAACAACAGTCACATCCTCCTGGCCTCAGCTGTGTGGTACCTGATTTTCTTCTGCCCTCTTAACCTGTTTTACAAATGCGTGGCCTTCATGCCTGTGAAGCTTGTGCTAGTTGCAATGAAAGAAGTGGTCCGCACACGTAAAATCGCTGCTGGAGTTCATCATGCGCACCATGCGTATCACCACGGCTGGCTGATCATGGTCATTACTGGTTATGTTAAGGGGTCAGGGGTCGCTCTCATGTCCAATTTTGAGCAGCTGTTGCGAGGAGTCTGGAAGCCAGAGACCAACGAAGTTCTCAACATGTCATTCCCTACCAAGGCCAGTCTGTATGGAGCCATTTTGTTCACCCTTCAGGAGGCTCACTTGCTCCCTGTGTCTAAAAGCACACTCATCTGCCTCTTCACACTCTTTATGGCCACAACCAAGGTGTTTATGACGGCCCGTCACTCTCACGGATCTCCATTCGCCCTCATCGAGTCCTGGCTGTGCCACCTGCTCTTCCGTTCACCCCTCGGCACCGAAGATGCCCATGATCATCACCACTCCGCTCCAGCCGCTGCCTCTGCGCCGCTCTCGCCCGCTAAAACCAAAGAGGAACTGAGTGAAGGAACCCGCAAGAGGAAGCCCAAGAAAGCAGAGTAgaataacaatacaaaaaatcaTCAACCCAACCTGTGATATGACAGAGCGGCCTGGCTCTACTTGAGAAAGGAGGGAATTTGATTGATTAAACCAATGCAAGTTTCTCTTTCAGTGGTGCTTTTAATGACAGACATGCCATATAGGGACTCTGTAAATAGCTTACCCCCCTCTTTACCGACATCCATGTCTTTATTATACGTAATGTTTTCCATCATTCAAGCCCCTCCTCCCCTTGCATCTGATGATGTGCAGTGTGTCATGAACAGGTGAATGAACGAAAGGCAGTTTGAGTTTGACGTTTGAGTTCATACTTCACTGAAGGGTCAATCTGAATAACCTGATGAGACTCGTCGTCCACCGCTGGTTGACCCGACTTCCACAGAATActgctgctttttaaaatccAGTTGAATTgggaaaaaacacaatatattttcaaacaataaattaaaataaattattttaaaatca

Function

symbol description
tmem38a Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in nuclear membrane and sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to human TMEM38A (transmembrane protein 38A).

NR:

description
PREDICTED: trimeric intracellular cation channel type A

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252331.1 True 1444 mRNA 0.47 6 3752956 3759693

Neighbor

gene id symbol gene type direction distance location
LOC122353704 LOC107568056,LOC107730479,LOC107657995 coding upstream 22181 3725260 ~ 3730775 (+)
cpne5b cpne5b,LOC107680428,LOC107555996,LOC107751002,LOC107699334,LOC107101079,LOC105027122,LOC107385564 coding upstream 95667 3543698 ~ 3657289 (+)
kif21b kif21b,LOC107592560,LOC107680414 coding upstream 220783 3467547 ~ 3532173 (+)
srpk1b srpk1b,LOC107699336,LOC107714507,LOC107680449,LOC107592563,LOC107751004 coding upstream 300815 3415053 ~ 3452141 (+)
mapk14b mapk14b,LOC107680431,LOC107714506,LOC107699338,LOC103028137,LOC104939458,LOC108436315 coding upstream 338037 3392783 ~ 3414919 (+)
thop1 thop1,LOC107568058,LOC107658499,LOC107592556,LOC107730481 coding downstream 1853 3761546 ~ 3769572 (+)
reep6 reep6,LOC107698004,LOC107745351,LOC107556177,LOC107658751,LOC107710439 coding downstream 32212 3791905 ~ 3795946 (+)
LOC122354262 si:ch73-238c9.1,LOC107710444,LOC107658759,LOC107592584,LOC107745343 coding downstream 92919 3852612 ~ 3854297 (+)
trnaq-cug_18 NA coding downstream 147823 3907516 ~ 3907588 (+)
LOC122354347 LOC107710444,LOC107658759,LOC107745343 coding downstream 160371 3920064 ~ 3921062 (+)
G79039 NA non-coding upstream 3470 3748587 ~ 3749486 (+)
LOC122353534 NA non-coding upstream 5465 3746093 ~ 3747491 (+)
LOC122354704 NA non-coding upstream 5944 3746927 ~ 3747012 (+)
LOC122354703 NA non-coding upstream 6214 3746650 ~ 3746742 (+)
G79022 NA non-coding upstream 26865 3704241 ~ 3726091 (+)
G79037 LOC107745340,LOC107698002,LOC107556194,LOC107710448,LOC107592552,LOC107658524 non-coding downstream 40780 3800473 ~ 3858370 (+)
G79051 NA non-coding downstream 123113 3882806 ~ 3886949 (+)
G79053 NA non-coding downstream 159144 3918837 ~ 3919429 (+)
G79144 NA non-coding downstream 419849 4179542 ~ 4294755 (+)
G79187 LOC107560418,LOC107560425 non-coding downstream 650421 4410114 ~ 4412128 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other upstream 361727 3386258 ~ 3391229 (+)
LOC122353713 LOC107714487,LOC107555999 other upstream 391298 3358210 ~ 3361658 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other upstream 480337 3270199 ~ 3272619 (+)
G78790 NA other upstream 926162 2825539 ~ 2826794 (+)
G78763 NA other upstream 1072814 2678135 ~ 2680142 (+)
nwd1 nwd1,LOC107730478,LOC107710443,LOC107658741,LOC107592553,LOC107655543 other downstream 11862 3771555 ~ 3785342 (+)
trnaq-cug_17 NA other downstream 24271 3783964 ~ 3784035 (+)
LOC122354455 LOC107710444,LOC107658759,LOC107592584,LOC107745340,LOC107556194,LOC107698002,LOC107592552,LOC107710448,LOC107658524 other downstream 36713 3796406 ~ 3929528 (+)
adgrl2a adgrl2a,adgrl2 other downstream 301236 4060929 ~ 4152591 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other downstream 608732 4368425 ~ 4375388 (+)

Expression


Co-expression Network