bhlhe40 (bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081)


Basic Information

Item Value
gene id bhlhe40
gene name bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8997857 ~ 9000630 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252368.1
tatacgtatatataatttttttttttttggaaaaataaatctacCCTATTCATACATCAGTAAGATATATTAATAGGGTAAAATGGAAAGGATTACCAGTGCTCAGCCTCCTCCGTGTATGGCCAAACACGCCTCGCTGGATATCTCTGACATGCAAGGaATGGACTTTCCCATGTATGTGTACAAGCCCCGGCGGGGAATGAAGCGCAGTGAGGACAGCAAGGATACATACAAATTGCCTCACCGATTGATCGAGAAGAAAAGGAGAGACAGAATAAACGAGTGCATCGCGCAGTTGAAGGATTTGCTGCCCGAACACCTTAAACTCACTACTCTGGGACACTTGGAGAAGGCCGTTGTGTTGGAGCTCACGCTCAAGCATGTGAAAGCTCTTAACAACCTgctggagcagcagcagcagaagatcATTTCCTTGCAGAATGGAATGCAAATCGGTGAACAGGGCAATGGGCACTCAGAAAACAGCGAGGAGATGTTCCGTTCCGGGTTCCACTTGTGTGCCAAGGAGGTTCTTCAATTCTTGGCCAATCAGGAGACCGTGCATGACCTGACACCTGCCCACATAATCAACCACCTTCAAAAAGTGGCGTCTGAGTTCATTCAAAGCCCACCAAGTCCTCGTCTAGAGGAGCCCACTCCCAAAGCTCCAGAAAGCAGGGAGAAACCTGCAAGCCCACAGCCTAAAGCGGCAGAGGGTCACGCCAAAAACTGCGTGCCCGTCATTCAAAGGACTTATCCCCACAGCAGTGAGCAAAGCGGGAGCGATACGGATACCGACAGCGGCTACGGGGGCGAGCTCGAGAAGCGCGAACTGAAAGCCCAACGGTCGGTCTACTACGGCAAAGATGCGGGAGATCTCAAGCACAGCAGCAACATTAAAGAGGAGCTGGACGAGCCACAGGCCAAGCGGCAGAGGTCCGACTCTTCGGAAGATGAATCTCTGTCAGGGCCCGAAATAGTGGGCGGCCACAGCCCCTATATGAGCTTTTCTCCACACCAGCCCCTTTGCATGCCCTTCTACCTCTTTCCACATGGAGCAGCCGCCGCATACTTGCCCATGTTGGAGAAGTGTTGGTACCCCGGAGGCATGCCCGTATTGTACCAAGGCCTCAGTGGCTCCCCGGCAGGCATGTCCCCCGAGAAACTCCCCTCATCCCTGGTCATGTCGTCAAGAGTGGGTTCCCCCGTCACCACCCCGACCTCCATGGACTCTCCTGCGCTCCTGCAGGCCCTGAAACAAGTTCCCCCATTAAACCTGGAAACCAAAGACTGAGGACCCACTTTGGGTTCTGCGATAGCCCGCTCTCCGAATGTCTTGGTCTTGAGAGTGGACTTCCTGCTGAATAAGCTCCCGAAGAGGGTTCGGTTGAAAGGGGGGCGCGAAGGCAAAGTTCAAAGACACGCCCCTCAAGCTTGGCAAACAGCTGTTCTGATTCCTCTCAGACGTACGTACGACGGCCTCCCTCCAAATGCGGAGACACACTCATAGACTCTCACAACACTCTTATCAACTCCCTCCACAACCAGCAGGCAAACACCCAGAGATGGAACGGTCCGCTTGGACACAGACGGGTAAAGGAGGCCTCGTGCACAGCACTGTGAGACACTGTGAAGAAGGTCAAAACGAGGACAGTGAGCTCTGTCCTTGGAGAAAAAAGGACCTGGGGTGGGCGAAGAGGCTGCTCTCTGCACTTAACGCCGAATGTTTGTCGAAAACAATAACCCAGAATGTGACGTGCAGACGGTCCCCCAACGACAAAGACCTTGCCCTTTGCACAAGCACCTTTTCATTTGttgaatgtaaatgaaaaagtcattttttctaataaaacatCACCCCTGTA

Function

symbol description
bhlhe40 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian regulation of gene expression; locomotor rhythm; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human BHLHE40 (basic helix-loop-helix family member e40).

NR:

description
class E basic helix-loop-helix protein 40-like

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252368.1 True 1865 mRNA 0.52 5 8997857 9000630

Neighbor

gene id symbol gene type direction distance location
gpx1a gpx1a,LOC107577558,LOC107685977,LOC107718196 coding upstream 123156 8872791 ~ 8874701 (+)
rrp9 rrp9,LOC107659541 coding upstream 194566 8797976 ~ 8803291 (+)
nfya nfya,LOC107715785,LOC107685981,LOC107576873,LOC107659544,LOC107582374,LOC107718225 coding upstream 211797 8779094 ~ 8786060 (+)
sort1a sort1a,LOC107659546,LOC107685983,LOC107582375,LOC107715784,LOC107718224 coding upstream 219294 8758785 ~ 8778563 (+)
psma5 psma5 coding upstream 240050 8753056 ~ 8757807 (+)
arl8bb LOC107573080,LOC105934196,LOC107715779,LOC107659529,LOC107095653,LOC107577661,LOC107685974 coding downstream 3450 9004080 ~ 9009237 (+)
sema3fb LOC107715794,LOC107659533,LOC107575741,LOC107685972,LOC107572222 coding downstream 84011 9084641 ~ 9141929 (+)
LOC122353647 LOC107718244,LOC107715798,LOC107686009,LOC107575380,LOC107551786,LOC107677506 coding downstream 261310 9261940 ~ 9266699 (+)
dnah1 dnah1 coding downstream 443188 9443818 ~ 9474222 (+)
mapkapk3 mapkapk3,LOC106525176,LOC107677509,LOC107574676,LOC107551779 coding downstream 474881 9475511 ~ 9491017 (+)
G80120 NA non-coding upstream 56336 8941084 ~ 8941521 (+)
LOC122354296 NA non-coding upstream 173676 8823084 ~ 8824181 (+)
G80047 NA non-coding upstream 300597 8578811 ~ 8697260 (+)
G80042 NA non-coding upstream 335375 8555431 ~ 8662482 (+)
G80039 NA non-coding upstream 341443 8549785 ~ 8656414 (+)
LOC122354434 NA non-coding downstream 12130 9012760 ~ 9050856 (+)
G80272 NA non-coding downstream 251164 9251794 ~ 9254355 (+)
G80282 NA non-coding downstream 316286 9316916 ~ 9318241 (+)
G80277 NA non-coding downstream 355792 9356422 ~ 9372759 (+)
G80296 NA non-coding downstream 368439 9369069 ~ 9422660 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 18616 8891450 ~ 8979241 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other upstream 116201 8879583 ~ 8881656 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 118869 8875288 ~ 8878988 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other upstream 178578 8818390 ~ 8819279 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other upstream 393573 8602187 ~ 8604284 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other downstream 422320 9422950 ~ 9425302 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other downstream 521168 9521798 ~ 9540121 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 1465992 10466622 ~ 10471187 (+)
G80638 NA other downstream 1640502 10641132 ~ 10661970 (+)
G80761 NA other downstream 2221717 11222347 ~ 11226622 (+)

Expression


Co-expression Network