nab2 (nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369)


Basic Information

Item Value
gene id nab2
gene name nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1704624 ~ 1716129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252410.1
cacagagcgcttTAAACGAGCAGCAGCCACTCAGCGTCTGAGGCGCCGGGGAATCCCGCTGCTCGCGCCGCGTCACCGAGCCCGATCACCGCCCACAGACCCGGTGATCTCCGGCGCTCTTCCACGCGAACGCCGACTTCACTCCCGTCCGTCCGTGCACCGAATCCGCCACGCTGTTCAGCATCTAAACGGCCGGCTTTCCCCCCCGTGCAGACCCTGAGCTCAAACGGTGACAGAATTCCCCGTCCCTCCACGCCCCTCCGCGAGCGGCGCTTCCCCCCGCGCTCAGACCGGAGAGGAAGGCTCTTATTCGGTCAGATGGCGTGCCGCAGTCCGCCCACGCGTTTCTCGCGCCCACACGGGCAGCGAAAGGAGCGTCATTAACTCACCGCCACTGCCAGCGCAGCAGAAGCACAGAGTTTCAAGAACATTTCAGTCCAGGCGCACATCTGTAGAACAAGGTCTAACAAGCacagagaacaaaaataaaccgGGCGTCGGAGGCGCAGAGACACGGGGGTTTTTAACAGAAGGGAAAGTTTGACTCGGTCGCCGGGAGCTCAAGCGGTCTGCCGGATCCCGTCCTGGATTCTGTCCTGAAACCTCTCGAGCCGCGCATCGGGATGTCTCTTCCGCGGACGCTGGGCGAGCTCCAGCTCTACCGAGTTTTACAAAGGGCCAACCTGCTGATGTACTACGACACCTTCATCCAGCAGGGCGGCGATGACGTCCAGCAGCTGTGCGAGGCGGGCGAAGACGAGTTCCTGGAGATCATGGCCCTGGTCGGCATGGCCACCAAACCCCTGCATGTGCGGCGTCTGCAGAAGGCTCTGCGCGACTGGGCCGCAAACCCGGCGCTGTTCAACCAGCCTCTGGCCGCCAACGTGGCCCCTTGTGGGATCCCTCTCCTTCGGATCGACTCCGCAGGCTCGGGGGGCGCTGGGGGCAGAAAGTGTTTAAGCAACGGTCAGCCGGGCTCTCcgggagaaagagaggaagtggGATCTTGCCTCACGCCGCTCAGGGATAACAGTCCGAAGAGCCCGTGCTCGCAGGCTTCTCCTGTACCTCCTGACCATCTGTACCGAGAAAAACTGTCCCCCATGGACCCCCACTGGCTCAGTCCGGAGATGTACGGAGCCGTCGAGTTAGATGAAGATCAGCCCATTACCCCTCTGCCTTTCGCTTGCCACTCGCGTCTCCTCGGTCCTCCGACGCCGACGTCTTCTTCGTCCTCCTCCACTATGACCTCTCCGTGGCCCGGGGGTCAGCTGGACCCGGAGACCATCAAAGCCGTGGAGGAGAGCGTCGATAGGCTGCTGAGAACCATGCCGCAAGCTGACCAAACCGAGGTGAAGACGCTTTTGAGGCTCAataagaaaatggccaagacggTGGGACACATTTTCAACCTGGAGCCTCAGGACAGGAGCAAAGAGGAAGAGATTCGCAAGTACAGCCTGATCTACGGCCGCTTTGACTCCAAGAGGAGGGAAGGGAAACAGCTCACCCATCATGAGATGCTCATCAACGAGGCGGCGGCTCAGTTCTGCATCCGTGACAACGCTCTGTTGTTACGTAGAGTCGAACTCTTCTCTTTAGCGCGGCAAGTGGCGAGAGAATGTGCCTACACGTCAACGTTTAAACATAACAGGACATACTCAGATGATTGCACTGCCTCTGTTGACTGTTCTGCTCAGAAGAGACTCAAGCTTGATGTCACAGATTCTGACAGACTGTGTAAGGATCCAGTAATCAACAGTGACAACAGATCTACAGCGGATGACAACAGCCTCTCTGGAGAAAGTCTGGATAGTTTAACACAAGATATCAGCCCTCAGTTGCACCCCTCCTCATCCCCTCACCCCCTCACCGACACTGCTGGCCTCATCAACTGGAGCCGCCAGCTCATGCAGCAAACGCTCATGGATGAGGGCCTCAGATTGGCTAGAATGGTGTCACGTGACAACGCGAGCAAAGTCAGCCTAGGGTCAGAAAAGAGACAAATTTCAGAGATGGAGGAGAAGGTGTCAGAGAGGAGAGGATCAAGTAACAGAAGCAGCAGTCCAGCAAACACCAAAGACGATCCGTAACTGACATTCTGGAAGTCTCCATGTTGAACTCAGGTTGGATGTCATGTCTAAATGCAGCCGCGGTGTTCGGTTCGCTATGGTCTGTGAAGCTTTGAAGACTTGTCTGCACCTTGCCGTGTTCTTTTAGAGCATTTAAGGGCGTTTGTGGAAAGTTATTGTATCTTTGCGAACGAAATTTGAAGCAACGTCGTGTTACAAATACATTCCGTGTTCTCTGTCGGGTTAAAATGTCAGTGAAAAGCTTCAATGGTGCTAATTTTGTGTCGAGCTAATTCTAGAACGAATCTGTGTTACCTAAACCTTAATTTATTCGGTCAGATGACCTGCTTCTCGTTCTAAGCGGAGCTGGGAGACTTTGGGTTTACTTTTCATTCCATTTTCTCAGTTTCTTGTTTAGATGGAGTTCTAAGAAAGGTTTGGGAGGAACGTGTTTATTTAATCCACTTTATTATGTACAGCGAGCGAAATACGTTTACAGGTTTTGGATTATATTAACATGTGAAATCCTGAAATCGACTATATTAAGAAACCCTTACACTAGCAACGCACCGATGCAGTAAACATGAATACAGCAACTCTAAAATGCACAGATGAGTTTTCTTGggttacaaaatgtaaatgattcaaatgattcaaacgAATCGAATGAACGTTTCAAGGTTGAATGGCTAATGAGAACAGCATTACAGCGCTCATGTTAAAAATAGATCTGTGGCCTCTTTAAtgacagattatttattttttaatttctcaataaattatattgtattgtttctCTA
>XM_043252411.1
cacacagagcgcttTAAACGAGCAGCAGCCACTCAGCGTCTGAGGCGCCGGGGAATCCCGCTGCTCGCGCCGCGTCACCGAGCCCGATCACCGCCCACAGACCCGGTGATCTCCGGCGCTCTTCCACGCGAACGCCGACTTCACTCCCGTCCGTCCGTGCACCGAATCCGCCACGCTGTTCAGCATCTAAACGGCCGGCTTTCCCCCCCGTGCAGACCCTGAGCTCAAACGGTGACAGAATTCCCCGTCCCTCCACGCCCCTCCGCGAGCGGCGCTTCCCCCCGCGCTCAGACCGGAGAGGAAGGCTCTTATTCGGTCAGATGGCGTGCCGCAGTCCGCCCACGCGTTTCTCGCGCCCACACGGGCAGCGAAAGGAGCGTCATTAACTCACCGCCACTGCCAGCGCAGCAGAAGCACAGAGTTTCAAGAACATTTCAGTCCAGGCGCACATCTGTAGAACAAGGTCTAACAAGCacagagaacaaaaataaaccgGGCGTCGGAGGCGCAGAGACACGGGGGTTTTTAACAGAAGGGAAAGTTTGACTCGGTCGCCGGGAGCTCAAGCGGTCTGCCGGATCCCGTCCTGGATTCTGTCCTGAAACCTCTCGAGCCGCGCATCGGGATGTCTCTTCCGCGGACGCTGGGCGAGCTCCAGCTCTACCGAGTTTTACAAAGGGCCAACCTGCTGATGTACTACGACACCTTCATCCAGCAGGGCGGCGATGACGTCCAGCAGCTGTGCGAGGCGGGCGAAGACGAGTTCCTGGAGATCATGGCCCTGGTCGGCATGGCCACCAAACCCCTGCATGTGCGGCGTCTGCAGAAGGCTCTGCGCGACTGGGCCGCAAACCCGGCGCTGTTCAACCAGCCTCTGGCCGCCAACGTGGCCCCTTGTGGGATCCCTCTCCTTCGGATCGACTCCGCAGGCTCGGGGGGCGCTGGGGGCAGAAAGTGTTTAAGCAACGGTCAGCCGGGCTCTCcgggagaaagagaggaagtggGATCTTGCCTCACGCCGCTCAGGGATAACAGTCCGAAGAGCCCGTGCTCGCAGGCTTCTCCTGTACCTCCTGACCATCTGTACCGAGAAAAACTGTCCCCCATGGACCCCCACTGGCTCAGTCCGGAGATGTACGGAGCCGTCGAGTTAGATGAAGATCAGCCCATTACCCCTCTGCCTTTCGCTTGCCACTCGCGTCTCCTCGGTCCTCCGACGCCGACGTCTTCTTCGTCCTCCTCCACTATGACCTCTCCGTGGCCCGGGGGTCAGCTGGACCCGGAGACCATCAAAGCCGTGGAGGAGAGCGTCGATAGGCTGCTGAGAACCATGCCGCAAGCTGACCAAACCGAGGTGAAGACGCTTTTGAGGCTCAataagaaaatggccaagacggTGGGACACATTTTCAACCTGGAGCCTCAGGACAGGAGCAAAGAGGAAGAGATTCGCAAGTACAGCCTGATCTACGGCCGCTTTGACTCCAAGAGGAGGGAAGGGAAACAGCTCACCCATCATGAGATGCTCATCAACGAGGCGGCGGCTCAGTTCTGCATCCGTGACAACGCTCTGTTGTTACGTAGAGTCGAACTCTTCTCTTTAGCGCGGCAAGTGGCGAGAGAATGTGCCTACACGTCAACGTTTAAACATAACAGGACATACTCAGATGATTGCACTGCCTCTGTTGACTGTTCTGCTCAGAAGAGACTCAAGCTTGATGTCACAGATTCTGACAGACTGTGTAAGGATCCAGTAATCAACAGTGACAACAGATCTACAGCGGATGACAACAGCCTCTCTGGAGAAAGTCTGGATAGTTTAACACAAGAGATGGAGGAGAAGGTGTCAGAGAGGAGAGGATCAAGTAACAGAAGCAGCAGTCCAGCAAACACCAAAGACGATCCGTAACTGACATTCTGGAAGTCTCCATGTTGAACTCAGGTTGGATGTCATGTCTAAATGCAGCCGCGGTGTTCGGTTCGCTATGGTCTGTGAAGCTTTGAAGACTTGTCTGCACCTTGCCGTGTTCTTTTAGAGCATTTAAGGGCGTTTGTGGAAAGTTATTGTATCTTTGCGAACGAAATTTGAAGCAACGTCGTGTTACAAATACATTCCGTGTTCTCTGTCGGGTTAAAATGTCAGTGAAAAGCTTCAATGGTGCTAATTTTGTGTCGAGCTAATTCTAGAACGAATCTGTGTTACCTAAACCTTAATTTATTCGGTCAGATGACCTGCTTCTCGTTCTAAGCGGAGCTGGGAGACTTTGGGTTTACTTTTCATTCCATTTTCTCAGTTTCTTGTTTAGATGGAGTTCTAAGAAAGGTTTGGGAGGAACGTGTTTATTTAATCCACTTTATTATGTACAGCGAGCGAAATACGTTTACAGGTTTTGGATTATATTAACATGTGAAATCCTGAAATCGACTATATTAAGAAACCCTTACACTAGCAACGCACCGATGCAGTAAACATGAATACAGCAACTCTAAAATGCACAGATGAGTTTTCTTGggttacaaaatgtaaatgattcaaatgattcaaacgAATCGAATGAACGTTTCAAGGTTGAATGGCTAATGAGAACAGCATTACAGCGCTCATGTTAAAAATAGATCTGTGGCCTCTTTAAtgacagattatttattttttaatttctcaataaattatattgtattgtttctCTA
>XR_006252099.1
cacacagagcgcttTAAACGAGCAGCAGCCACTCAGCGTCTGAGGCGCCGGGGAATCCCGCTGCTCGCGCCGCGTCACCGAGCCCGATCACCGCCCACAGACCCGGTGATCTCCGGCGCTCTTCCACGCGAACGCCGACTTCACTCCCGTCCGTCCGTGCACCGAATCCGCCACGCTGTTCAGCATCTAAACGGCCGGCTTTCCCCCCCGTGCAGACCCTGAGCTCAAACGGTGACAGAATTCCCCGTCCCTCCACGCCCCTCCGCGAGCGGCGCTTCCCCCCGCGCTCAGACCGGAGAGGAAGGCTCTTATTCGGTCAGATGGCGTGCCGCAGTCCGCCCACGCGTTTCTCGCGCCCACACGGGCAGCGAAAGGAGCGTCATTAACTCACCGCCACTGCCAGCGCAGCAGAAGCACAGAGTTTCAAGAACATTTCAGTCCAGGCGCACATCTGTAGAACAAGGTCTAACAAGCacagagaacaaaaataaaccgGGCGTCGGAGGCGCAGAGACACGGGGGTTTTTAACAGAAGGGAAAGTTTGACTCGGTCGCCGGGAGCTCAAGCGGTCTGCCGGATCCCGTCCTGGATTCTGTCCTGAAACCTCTCGAGCCGCGCATCGGGATGTCTCTTCCGCGGACGCTGGGCGAGCTCCAGCTCTACCGAGTTTTACAAAGGGCCAACCTGCTGATGTACTACGACACCTTCATCCAGCAGGGCGGCGATGACGTCCAGCAGCTGTGCGAGGCGGGCGAAGACGAGTTCCTGGAGATCATGGCCCTGGTCGGCATGGCCACCAAACCCCTGCATGTGCGGCGTCTGCAGAAGGCTCTGCGCGACTGGGCCGCAAACCCGGCGCTGTTCAACCAGCCTCTGGCCGCCAACGTGGCCCCTTGTGGGATCCCTCTCCTTCGGATCGACTCCGCAGGCTCGGGGGGCGCTGGGGGCAGAAAGTGTTTAAGCAACGGTCAGCCGGGCTCTCcgggagaaagagaggaagtggGATCTTGCCTCACGCCGCTCAGGGATAACAGTCCGAAGAGCCCGTGCTCGCAGGCTTCTCCTGTACCTCCTGACCATCTGTACCGAGAAAAACTGTCCCCCATGGACCCCCACTGGCTCAGTCCGGAGATGTACGGAGCCGTCGAGTTAGATGAAGATCAGCCCATTACCCCTCTGCCTTTCGCTTGCCACTCGCGTCTCCTCGGTCCTCCGACGCCGACGTCTTCTTCGTCCTCCTCCACTATGACCTCTCCGTGGCCCGGGGGTCAGCTGGACCCGGAGACCATCAAAGCCGTGGAGGAGAGCGTCGATAGGCTGCTGAGAACCATGCCGCAAGCTGACCAAACCGAGGTGAAGACGCTTTTGAGGCTCAataagaaaatggccaagacggTGGGACACATTTTCAACCTGGAGCCTCAGGACAGGAGCAAAGAGGAAGAGATTCGCAAGTACAGCCTGATCTACGGCCGCTTTGACTCCAAGAGGAGGGAAGGGAAACAGCTCACCCATCATGAGATGCTCATCAACGAGGCGGCGGCTCAGTTCTGCATCCGTGACAACGCTCTGTTGTTACGTAGAGTCGAACTCTTCTCTTTAGCGCGGCAAGTGGCGAGAGAATGTGCCTACACGTCAACGTTTAAACATAACAGGACATACTCAGATGATTGCACTGCCTCTGTTGACTGTTCTGCTCAGAAGAGACTCAAGCTTGATGTCACAGATTCTGACAGACTGTGTAAGGATCCAGTAATCAACAGTGACAACAGATCTACAGCGGATGACAACAGCCTCTCTGGAGAAAGTCTGGATAGTTTAACACAAGATATCAGCCCTCAGTTGCACCCCTCCTCATCCCCTCACCCCCTCACCGACACTGCTGGCCTCATCAACTGGAGCCGCCAGCTCATGCAGCAAACGCTCATGGATGAGGGCCTCAGATTGGCTAGAATGGTGTCACGTGACAACGCGAGCAAAGTCAGCCTAGGGTCAGAAAAGAGACAAATTTCAGTGGAACAGTTCTCCTTCGAGCCATCCGGTATGCAGAGGAACGTTTCTTTATAGGAACACGGCGTtggatcctttgcagtgaatgggtgccgccaggagtccaaacagctgataaaaacatgacaataatcTACTCTACACTGCAGTCCAATCCATCGGTAATGGgttgtgaagtgaaaagttcAAACAAATCCCTTGTTAGGACGTTTCGACTTTAAACATCTCCTCCTGGTTAAAATGGGAGTCCATAATCCAGATGGAGGAGAAGGTGTCAGAGAGGAGAGGATCAAGTAACAGAAGCAGCAGTCCAGCAAACACCAAAGACGATCCGTAACTGACATTCTGGAAGTCTCCATGTTGAACTCAGGTTGGATGTCATGTCTAAATGCAGCCGCGGTGTTCGGTTCGCTATGGTCTGTGAAGCTTTGAAGACTTGTCTGCACCTTGCCGTGTTCTTTTAGAGCATTTAAGGGCGTTTGTGGAAAGTTATTGTATCTTTGCGAACGAAATTTGAAGCAACGTCGTGTTACAAATACATTCCGTGTTCTCTGTCGGGTTAAAATGTCAGTGAAAAGCTTCAATGGTGCTAATTTTGTGTCGAGCTAATTCTAGAACGAATCTGTGTTACCTAAACCTTAATTTATTCGGTCAGATGACCTGCTTCTCGTTCTAAGCGGAGCTGGGAGACTTTGGGTTTACTTTTCATTCCATTTTCTCAGTTTCTTGTTTAGATGGAGTTCTAAGAAAGGTTTGGGAGGAACGTGTTTATTTAATCCACTTTATTATGTACAGCGAGCGAAATACGTTTACAGGTTTTGGATTATATTAACATGTGAAATCCTGAAATCGACTATATTAAGAAACCCTTACACTAGCAACGCACCGATGCAGTAAACATGAATACAGCAACTCTAAAATGCACAGATGAGTTTTCTTGggttacaaaatgtaaatgattcaaatgattcaaacgAATCGAATGAACGTTTCAAGGTTGAATGGCTAATGAGAACAGCATTACAGCGCTCATGTTAAAAATAGATCTGTGGCCTCTTTAAtgacagattatttattttttaatttctcaataaattatattgtattgtttctCTA

Function

symbol description
nab2 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human NAB2 (NGFI-A binding protein 2).

NR:

description
PREDICTED: NGFI-A-binding protein 2

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252410.1 False 2872 mRNA 0.52 7 1704624 1716127
XM_043252411.1 False 2688 mRNA 0.52 6 1704624 1716129
XR_006252099.1 True 3127 transcript 0.52 8 1704624 1716129

Neighbor

gene id symbol gene type direction distance location
cnpy2 cnpy2,LOC107572063,LOC107557548 coding downstream 4166 1697584 ~ 1700458 (-)
dgkab si:ch73-267c23.10,LOC107737366,LOC107696033,LOC107557543,LOC107730898,LOC107683646,LOC107557545 coding downstream 26429 1664162 ~ 1678195 (-)
slc2a10 slc2a10,LOC107696032,LOC107737362 coding downstream 42660 1657296 ~ 1661964 (-)
znf740a znf740a,LOC107754560,LOC107557541,LOC107551334,LOC107687104,LOC107687371 coding downstream 116794 1565660 ~ 1587830 (-)
hnrnpa1a hnrnpa1a,LOC107551332,LOC107707363,LOC107754559 coding downstream 139969 1558495 ~ 1564655 (-)
inpp1 inpp1,si:ch211-160o17.2,LOC107737355,LOC107683640,LOC107730897,LOC107562242 coding upstream 9141 1725270 ~ 1729839 (-)
LOC122353575 sarnp,LOC107696044 coding upstream 46446 1762575 ~ 1766074 (-)
mmp19 mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650 coding upstream 62180 1778309 ~ 1786347 (-)
pmela pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442 coding upstream 73623 1789752 ~ 1797665 (-)
timeless timeless,LOC107689440 coding upstream 86616 1802745 ~ 1822748 (-)
G78574 LOC106524655 non-coding downstream 190721 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 192392 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 193098 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 255619 1444615 ~ 1449005 (-)
G78555 NA non-coding downstream 268695 1434638 ~ 1435929 (-)
LOC122354127 NA non-coding upstream 23571 1739700 ~ 1741018 (-)
G78726 NA non-coding upstream 207576 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 767541 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 771355 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 980280 2696409 ~ 2696697 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 7837 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 444534 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 729837 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 910488 599107 ~ 794136 (-)
G78170 NA other downstream 1248626 453134 ~ 455998 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1097223 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1103459 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1121154 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 1122112 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 1122718 2838847 ~ 2838919 (-)

Expression


Co-expression Network