tmf1 (LOC107600287,LOC107753777,LOC107656057,LOC107729398,LOC107696823,LOC107558889)


Basic Information

Item Value
gene id tmf1
gene name LOC107600287,LOC107753777,LOC107656057,LOC107729398,LOC107696823,LOC107558889
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18064928 ~ 18074537 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252416.1
TAACTATTAGCTGATTGGTCTAAAATGtcagatgaaaacaaacacttttatccGTCCATCTTTGTAAATAAAGGGGTTTGCGATGTAATTATTCCACAGAATTGTCCCGTAGTCGTTGGTCACGTGGTCCCGACGTCCTTACGTCACGCGCAGGGTTGACGCGGTTTTGTTGATGCTACGTGGATGGGAAGTAGCCTAGTTCTCGAGCTGCCAGAGGGAACCTAAACAAAACAATGCGTGGAAGTACAATTTAGAAGCCGAGCGACGCGAAGGCAAATAAAATGCCGCCCAGTACGTCGTTTATTCATTCACACAAGCGAGTTCCATTTTAGCGTCGGATTATGTCAACTGCCAGCAAACTGTCAGTTGTTTTGCGAGCGTTATTAGCCGCGAAGCTAACGTGGACGGCGGCCTAACGTACAAACGCAAACCACTTGCTTGGCGTGGAGTAGATCTGCTCTTACTCGGGATGCTTTTGACCATGTCGTGTTTTATGTAGACGTTCACTGAGCTGTCACGCAACCGGCTGGAAGTTAAGCAACATGAGTTGGTTCAACGCTTCACATCTGTCGAGTTTTGCTAAACAAGCGCTGACAACCGCTCAGAAATCCATCGACAGAGTTCTGGACATTAAAGAAGAGGACCAGTGGGGTGACACGACCGGGCAGACCTTTACTGATCCACCTGGCAAGCCGGTATCAACGGGATGGGCTATGAACCAGTGGAACTCGCCCTCCGAGGAACATACAAATACTCTCCCTCCATCATCCGAGGCCATTACTAAGCCTGTCACACGGACTGTGGTTGACGAATCTGAGGATTTTTTTAGTGCCTTTCTGCCGCATGGAGACACACAAACTGTAAGCAACGCTAAAGTGGTGTCTGTGCCGCCTGCCAAGTCGAACCGCAGACTACGGGAAAAAGCAGACAAGGAGAAGGAGCTGGAGGTCAGTGATGCACAAGATCAGTCAGACCTCAGCATATGCAGCAGCCTGGAAACTATCGAGATAAAGCCAACTGGGACAGAGCTTTTGGAGCAAAATTCGTTCTCGGCAGATGAGCAGTCACAACCAGATCTGGTTGTTCCTGTTTCATCCGTTGCCCCAGAGCAAGCTGCTGAGCAGGAGACCAGCAATgaccagacagagacagaagacTTAGCTTTACCTTCAGATGTCACACTCACAAATATACCTTTATCATCTACTGAGGTTGAATCTGCAGAAGTGTTCGAACAAGCTTTGACCATTGAGACCAAAAATTCAGTGAAAACCTTGCCTGTCCCTCCTAAAGAAATCCTGTTAGAATCCAAAGACACTAAATCAGAGGACAGACAAAGCGACACCCCTTCTCCCCCTGTTAGTGCCTTCTCATCTGGTACTTCCACTACCAGCGACATCGAGGTTTTGGACCATGAGAGCGTGCTAAGCGAGAGCTCGGCCAGCTCCAGACAGGAGACCGCAGAGGCTAAAGCCGGTCTCCACCTAATGCAGGGCTCTTTCCAGCTGCTCTCGGCTTCGACGTGCTCCGACTTCCCTCGTCTGGACGAATACCCAAAACTCACCGAAAGCTGTGGCTCATCGTCTGATGCTTTCGAGCGCATCGACTCGTTTAGTGTGCAGTCGTTGGACAGCCGTAGCGTCAGCGAAGTGAATTCTGATGATGAGATCCCGGGCAACCGCACCTTAGCTTCCATCACGGCCGGGCATTTGCCCGCTCCTGCTCAGTCACCCCCACAGACCAATCAGAAGGAAGAGGAGGTTATGACCGAGTCAGTAAATGACCTTTCGCTGGACGATAACGAGATGGAGGAAAGTGGTCGCAGTGCTACGCCAGTGAACTGTGAGCAGACAGATGAGCTGCAGGACCAGGAACCTGAAATTGACCTCACTCTGACCAGCCCAAAAGTCGATATGAACGAAACTGTAATTTCACAGGATACTGAGGAGAAACAAGGAGATTCATCCCTTCAGACTTTTGAGCTCCAAAAGATTATCGAGGAGCTCTCTAGTCGACTAGAGAAGAGAGAATCACAGTTACTTGTGGTCAGTAAAGACAAAGCCAGACTGGAGGAGGAGTGTGACAATCTCAAAGATGAGATGATCGGTTTGAAGGAAGAAAGCTCTACAGTGCAGTCTTTAAAAGATGAGTTCACTCAACGCATAGCTGAAGCTGAGAGGAAAGCTCAACTCGCCTGCAAGGAGAGAGACATTGCCAAAAAGGAAATAAAGGGCCTTAGAGAAGAACTGGCGAGCAGGTTGAATTCAAATGAGACTTTGGAACTGATAAGAGAGAAGGAGGAACAGATTAGAGAGTTGCTTGAAGAAGGCGAGAAACTGTCCAAGCAGCAGTTGCAGCACTCCAACATCATAAAGAAACTgcgtgtgaaagagagagagagtgacacGCAGATCACCAAACAGACCAAAAAACTGAAGGAACAGGAAGAAGAGCTAAAACACTTGCAGCAGGTTTTGGATGGCAAAGAGGAAGTAGAAAAGCAACACAGAGAGAACATCAAGAAGCTGAATGCTGTGGTGGAACGTCAGGAGAAAGAATTAAGTAAACTGCAGACCAGCAGCGAGGAGCTTCAAGAAAACAACCGGAGTTTGCAAGCGGCCCTCGATAGCTCCTACAAAGAGCTGGCTGAGCTGCATAAGGCCAATGCCACCAAAGATAGTGAAGCCCAGGAACTAGCACTGAGCAGAGAGGTACAGGCGAAAGAAGAGCTAAGTCTGGCTTTGGAGAAAGCACAAGAAGAGTCCCGCTTGCAACAAGAGGCACTGGCTAATCAGgTGGCAGATCTGAGGCTGGCTTTACAGAGAGGTGAGCAGCAGCAGGCCAAGAAGGAAGATTACCTGAGGGAGGAGATCAGTGAGTTACAGCAGCGCTTACAAGAAGCGGAGACCAGAAACCAGGAACTAAGTCAAAGTGTTACATCTGCCACACGGCCCCTCCTTCGACAGATAGAGAACCTCCAGGCAACACTTGGGGCCCAGACAGCATCATGGGAAAAATTAGAGAAGAACATCTCTGACCGCTTAGCTGAAGCCCAAACCCAGCTTGCTATATCTGTAGAGAAAGAGCGTTCAGCTACAGAGGAGCTGCTAGCCATCCGAGCTCAGATAGCATCGTTAGAGTCTCAGACTTCTCTGTTGAGGCAAGAGAAAGGACGTCTGCAGGGGCAGCTGGATGCAGAGAGGGTGCGACGGGAAAAACTGGAGGATGACTTCAGCAGGGAGCGTGTAGAGCTGGAGAATCTTAAAGGAGAACATGCTCGAGGATTGGAGGAGGCCAAGAAGGAGAAGTTGCTTCTTACCAACCAACTTGAAATGGAGAAAATGAAGgtggagcaggagaagaagaaatgtTACCTTGCACAAGAGGCCCTcaaagaaaagGAGAGGAAGTCTCTGAGTCTGTCTGTGACTGATGCTCCAGCATCCTCCACTCCTACGCTGTCCCGTTCCAGTTCTGTCAGTGGGGCTGAGCACGCCGGCTTACCTTCCTCCCTTTTCTCACAGcaggAGGATTCTCTCGACCATTCTTTTAGCACCATGACCATGTCCATCAGTGGGACTAACCTATATGAGGCAGCTCGACTGGGCGGTGGATCCAGTGTCATTGAGAGCCTGCAGTCTCAGCTCAAACTCAGAGAGGGTGAGATCGCCCAGCTGCAGATGGAGATTTCTAGTCTAGAAAGAAGCCGCACTGTCATGGCAGAAGAACTGGtgcgactgaccaatcagaatgatGAGATGGAGAGTAAAGTGAAGGAAATACCTAAACTGAAAGTGCAACTAAAGGATCTAGAACAAAGGCACAACACGATTCTCCAGATGTATGGAGAGAAGGCAGAGGAGGCAGAAGAGCTGCGTCTGGACCTAGAGGATGTAAAGAACATGTACAAAACGCAAATAGATGAACtattaaaaaatcaaaaataactgACTCTGCAAATGGACTGGTACACGTTTACTGCAAACAGAACTTCCCGTTGTTGGTAATAGAAGACcaagtaatttaaatgtattttattctgaGAGAAGGGTTCGTTCAACATATTTCAAGGTTCAGTGATATAGTTATTTAAGTGTCCTCTCATgggattttatttgaaattattttttcagttaataaacATGTTTGGTTTAAGAATTTCTTTTAGTATCGATACATGTGTAGGTGTTTAAGTTTGGTGGTTTCTTAACTCTTGAATTTGCACAATGAAGTGAGACTTTGAGTTTAGACTTTACGCGTTTGGATTATAAACAGAATTAATGAACGGCTACATTTTCCTCTGATCTTCATCCTCTGGGCTGTGCATCTTAGTGGTAAGCAGTTGATTTGCTGTTGACTGTCTCTTTTCTATGTAGACGAGTAAATATGCTTTCCAGGTTACTGTGGAGTACCACACTATCTGTAGTAGACTCAAAAGTcaagtttttttaatctcatcCAGCGCTGATTGAGATTCAGTGAGGAGGATGAGGGGACCCAGGAAAGTCTTTAACTGTCATATTCTATGAGATATGATTTCTGTAAATCATAAATTAGTCAAGACTGTCACATGTCAGTTTTATGCACACATGTAAATAAAGTAAGAGTTATGTATTGGACAGACTCAA

Function

NR:

description
TATA element modulatory factor isoform X2

GO: NA

KEGG:

id description
K20286 TMF1; TATA element modulatory factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252416.1 True 4628 mRNA 0.47 17 18064928 18074537

Neighbor

gene id symbol gene type direction distance location
eogt eogt,LOC107729408,LOC107558884 coding downstream 441 18052013 ~ 18064487 (-)
LOC122354072 NA coding downstream 251600 17809920 ~ 17813328 (-)
LOC122354069 NA coding downstream 259150 17802393 ~ 17805778 (-)
LOC122354584 si:ch211-232b12.5,LOC107727806,LOC107655055,LOC107562773,LOC107749476,LOC107599616,LOC107685688 coding downstream 372247 17682060 ~ 17692681 (-)
LOC122353782 LOC107727791,LOC107581429,LOC107691380 coding downstream 474705 17578325 ~ 17590223 (-)
uba3 LOC107753775,LOC107656056,LOC107558885,LOC107729399,LOC107696817 coding upstream 1053 18075590 ~ 18082073 (-)
cishb LOC107753774,LOC107600289,LOC107656055 coding upstream 8194 18082731 ~ 18085939 (-)
twf2b twf2,twf2b,LOC107600317,LOC107655958 coding upstream 12238 18086775 ~ 18094763 (-)
qrich1 qrich1,LOC107656052,LOC107600291,LOC107753772,LOC107729405,LOC107696825,LOC107558890 coding upstream 24758 18099295 ~ 18107346 (-)
stimate tmem110,LOC107656046,LOC107755187,LOC107696834,LOC107746891 coding upstream 69316 18143853 ~ 18153168 (-)
LOC122354075 NA non-coding downstream 245469 17818902 ~ 17819459 (-)
G82628 LOC107738115,LOC107654540 non-coding downstream 354122 17710451 ~ 17710806 (-)
G82619 NA non-coding downstream 370420 17693919 ~ 17694508 (-)
G82606 NA non-coding downstream 422401 17634803 ~ 17642527 (-)
LOC122353822 NA non-coding upstream 38811 18113348 ~ 18122237 (-)
G82753 LOC107600292,LOC107656050,LOC107746889 non-coding upstream 51451 18125988 ~ 18133130 (-)
G82918 NA non-coding upstream 535187 18609724 ~ 18610059 (-)
G82932 psmd6,LOC107696848 non-coding upstream 588884 18663421 ~ 18664566 (-)
G82934 NA non-coding upstream 624715 18699252 ~ 18699565 (-)
tafa4b fam19a4b,fam19a4,LOC107655986,LOC107600333,LOC107558879,LOC107696804,LOC107729393 other downstream 16805 18008365 ~ 18048123 (-)
LOC122354073 NA other downstream 243992 17820273 ~ 17820936 (-)
LOC122353787 prkd2,LOC107728165,LOC107699186,LOC107699228,LOC107752286 other downstream 293318 17742916 ~ 17771610 (-)
LOC122354587 prpsap2,LOC107720040,LOC107581734,LOC107737786 other downstream 348232 17714752 ~ 17716696 (-)
LOC122354622 NA other downstream 424031 17634806 ~ 17640897 (-)
mustn1b mustn1,mstn1,LOC103145767 other upstream 61347 18135884 ~ 18137388 (-)
fgd5a LOC107728634,LOC107600300,LOC107656043,LOC107696838,LOC107746894 other upstream 123292 18197829 ~ 18231521 (-)
trnav-aac_24 NA other upstream 495839 18570376 ~ 18570448 (-)
trnav-aac_25 NA other upstream 496614 18571151 ~ 18571223 (-)
G83230 golt1a,got1a,LOC107727772 other upstream 2092768 20167305 ~ 20171305 (-)

Expression


Co-expression Network