cishb (LOC107753774,LOC107600289,LOC107656055)


Basic Information

Item Value
gene id cishb
gene name LOC107753774,LOC107600289,LOC107656055
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18082731 ~ 18085939 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252425.1
TCCTCATTTCTCTCCTTTCGATTTCCTGGAGAACACTTGACAGAGGAGGCTCGTTCGGCTTTAGGGATTTACTGCTGTAAAATGTTTAGATGTTGACCGCATTCCCTCGCTTTTGTGGACGTTTGGTCGCCCTTATAGCGCCGCTGGAACAATGTTCCAAAGGATTCGCGTAAATTTCACGGTCTTTCCAAACTGTCATCGCACAGAAATCTGCCGCCTCTTGGTTACTTACAGAAGGTGACGGTTTTATGCCCACAAAGaAAGCCCTCATGCCAGAGCCACCTTCAGGAATGGTCGCTAGCCACACAAGTGCCCAAAACGAGAGGGTTGAATCAGAGGTTCATCCGATTCAGCGGGCCCAAGCCGTTCCGTACTCATGGGCCCCGGCTGAGGACTTGCGTTTTATCACCACCACCTTTCAGCACCTACATACCTCagGCTGGTACTGGGGTGGTATGACAGCCAGTGAGGCAAGGGATGCCCTAATTGGAGCATCAGAAGGGACTTTCCTTGTCCGTGACAGCAGCCATCCACTCTACCTCTTCACCCTGTCTGTACAGACGTGGAGAGGTCCAACTAATGTCCGTATTGAATATGACAGCGGCCAATTCCGTCTCGATTCCAGTTTTCCAGCCCGATCTAGCCTGTTGTCCTTCTCTGCTCTTCCTAGCCTCGTGCAGCACTACACATCCACGAGTCAAGAGGAGGAGAGGATAGCAGCTGAAGAACGTCACATGGTGTCAAAGGACAATGGCATCCTGCTAAAGCTCAGGAAGCCTCTGTACAGGCCTCAGGCCTTCCCGACATTACAGCACCTCACACGCCTCActataaacagacagacagattgcCATAAACAGCTGCCACTGCCACGGCCACTGCTGCTGTACTTGCAAGAATACCCCTTTCAGGTGTGAGGACACTTGGGGGGATGTTTGTGCATTTCGGGGTGGGGACTTTTGCAAAGTCAAAAGTGTTTTAGCCAAAATTTGCAAATATTGCTCCCTGGCAAAATCATGGGTACGTTTATTGCGGTCATGTATCAGAGGTGTGCAAATAAGGTGTGCAAATAAAGAactattttgtgtaaaaaaaaaaaaa
>XM_043252426.1
ttgtttttcGTCCTCATTTCTCTCCTTTCGATTTCCTGGAGAACACTTGACAGAGGAGGCTCGTTCGGCTTTAGGGATTTACTGCTGTAAAATGTTTAGATGTTGACCGCATTCCCTCGCTTTTGTGGACGTTTGGTCGCCCTTATAGCGCCGCTGGAACAATGTTCCAAAGGATTCGCGTAAATTTCACGGTCTTTCCAAACTGTCATCGCACAGAAATCTGCCGCCTCTTGGTTACTTACAGAAGGTGACGGTTTTATGCCCACAAAGCCCTCATGCCAGAGCCACCTTCAGGAATGGTCGCTAGCCACACAAGTGCCCAAAACGAGAGGGTTGAATCAGAGGTTCATCCGATTCAGCGGGCCCAAGCCGTTCCGTACTCATGGGCCCCGGCTGAGGACTTGCGTTTTATCACCACCACCTTTCAGCACCTACATACCTCagGCTGGTACTGGGGTGGTATGACAGCCAGTGAGGCAAGGGATGCCCTAATTGGAGCATCAGAAGGGACTTTCCTTGTCCGTGACAGCAGCCATCCACTCTACCTCTTCACCCTGTCTGTACAGACGTGGAGAGGTCCAACTAATGTCCGTATTGAATATGACAGCGGCCAATTCCGTCTCGATTCCAGTTTTCCAGCCCGATCTAGCCTGTTGTCCTTCTCTGCTCTTCCTAGCCTCGTGCAGCACTACACATCCACGAGTCAAGAGGAGGAGAGGATAGCAGCTGAAGAACGTCACATGGTGTCAAAGGACAATGGCATCCTGCTAAAGCTCAGGAAGCCTCTGTACAGGCCTCAGGCCTTCCCGACATTACAGCACCTCACACGCCTCActataaacagacagacagattgcCATAAACAGCTGCCACTGCCACGGCCACTGCTGCTGTACTTGCAAGAATACCCCTTTCAGGTGTGAGGACACTTGGGGGGATGTTTGTGCATTTCGGGGTGGGGACTTTTGCAAAGTCAAAAGTGTTTTAGCCAAAATTTGCAAATATTGCTCCCTGGCAAAATCATGGGTACGTTTATTGCGGTCATGTATCAGAGGTGTGCAAATAAGGTGTGCAAATAAAGAactattttgtgtaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: cytokine-inducible SH2-containing protein-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252425.1 False 1101 mRNA 0.49 3 18082731 18085929
XM_043252426.1 True 1107 mRNA 0.49 3 18082731 18085939

Neighbor

gene id symbol gene type direction distance location
uba3 LOC107753775,LOC107656056,LOC107558885,LOC107729399,LOC107696817 coding downstream 658 18075590 ~ 18082073 (-)
tmf1 LOC107600287,LOC107753777,LOC107656057,LOC107729398,LOC107696823,LOC107558889 coding downstream 8194 18064928 ~ 18074537 (-)
eogt eogt,LOC107729408,LOC107558884 coding downstream 18244 18052013 ~ 18064487 (-)
LOC122354072 NA coding downstream 269403 17809920 ~ 17813328 (-)
LOC122354069 NA coding downstream 276953 17802393 ~ 17805778 (-)
twf2b twf2,twf2b,LOC107600317,LOC107655958 coding upstream 836 18086775 ~ 18094763 (-)
qrich1 qrich1,LOC107656052,LOC107600291,LOC107753772,LOC107729405,LOC107696825,LOC107558890 coding upstream 13356 18099295 ~ 18107346 (-)
stimate tmem110,LOC107656046,LOC107755187,LOC107696834,LOC107746891 coding upstream 57914 18143853 ~ 18153168 (-)
sfmbt1 sfmbt1,LOC107600298,LOC107696806,LOC107656044 coding upstream 68146 18154085 ~ 18172225 (-)
prkcdb prkcd,prkcdb,LOC107728641,LOC107656045,LOC107600299,LOC107696837,LOC108435819 coding upstream 87706 18173645 ~ 18192786 (-)
LOC122354075 NA non-coding downstream 263272 17818902 ~ 17819459 (-)
G82628 LOC107738115,LOC107654540 non-coding downstream 371925 17710451 ~ 17710806 (-)
G82619 NA non-coding downstream 388223 17693919 ~ 17694508 (-)
G82606 NA non-coding downstream 440204 17634803 ~ 17642527 (-)
LOC122353822 NA non-coding upstream 27409 18113348 ~ 18122237 (-)
G82753 LOC107600292,LOC107656050,LOC107746889 non-coding upstream 40049 18125988 ~ 18133130 (-)
G82918 NA non-coding upstream 523785 18609724 ~ 18610059 (-)
G82932 psmd6,LOC107696848 non-coding upstream 577482 18663421 ~ 18664566 (-)
G82934 NA non-coding upstream 613313 18699252 ~ 18699565 (-)
tafa4b fam19a4b,fam19a4,LOC107655986,LOC107600333,LOC107558879,LOC107696804,LOC107729393 other downstream 34608 18008365 ~ 18048123 (-)
LOC122354073 NA other downstream 261795 17820273 ~ 17820936 (-)
LOC122353787 prkd2,LOC107728165,LOC107699186,LOC107699228,LOC107752286 other downstream 311121 17742916 ~ 17771610 (-)
LOC122354587 prpsap2,LOC107720040,LOC107581734,LOC107737786 other downstream 366035 17714752 ~ 17716696 (-)
LOC122354622 NA other downstream 441834 17634806 ~ 17640897 (-)
mustn1b mustn1,mstn1,LOC103145767 other upstream 49945 18135884 ~ 18137388 (-)
fgd5a LOC107728634,LOC107600300,LOC107656043,LOC107696838,LOC107746894 other upstream 111890 18197829 ~ 18231521 (-)
trnav-aac_24 NA other upstream 484437 18570376 ~ 18570448 (-)
trnav-aac_25 NA other upstream 485212 18571151 ~ 18571223 (-)
G83230 golt1a,got1a,LOC107727772 other upstream 2081366 20167305 ~ 20171305 (-)

Expression


Co-expression Network