LOC122354278 (LOC107654948,LOC107705440,LOC107736540,LOC107682154,LOC100538248)


Basic Information

Item Value
gene id LOC122354278
gene name LOC107654948,LOC107705440,LOC107736540,LOC107682154,LOC100538248
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 10726151 ~ 10734638 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252447.1
CGACACCAGAGATACCGGACACCGGGAGACGACAGCGCAGCGAGAGACGgtgaactacaaaaaaaaaaaaaaacatgaggcCGTCACTATGTCAAAGAAATGGAGtaacatttaaacttaaaaagaaatCTTGAAGATCTTTGTGGGTGGAGCTCTTTGGCAGGTATCTTTTCTTCCACCTGGGATCCGCTGACAGGGCGACCAGctctagAAAATGAAATCTCACGAGGGAGAACTGGAGAGAGAGATCTCTAAGGTTCAGGGCATGGTGTGTGAGCTGCGGGCAGGGTTTTCTCGTGCGCTGCTGGAGCTGAATCAGATTCAGCAGGGAGACACTGAGCTGCAGAGCCAGCTGGAGGACACAAGGCATGGCTGCAACAAGCGCGCCCTTCACCTTGAGAGTCTGGTGCTTTCCCTCAAGgaggagctggaggaggtaCGCTGTCAGTTTCGTCAACTCTGTGAGACACAAGACAGGAAACCACCGGAGAATCCAGGAATAGAGAAtAATGGAGTGGATGACAGTAGCGGACAGAGTAATGGTGCAGCAGAGGCTCCTCCCCTTTCACCTGTGGGCGGAGATTTCCTCATACACTGTTACCTGCAGGGATTACAGGTGTGGCAATGGGCCAGACAGAATACAGGTGCGGATTCTCTTTCCTGCCACGTGACACACAGCTGCCTGCGGCGGGGCAGGAGGCGGGGTGTGGTGGAGATGCTGCTCCGGTCTGAACGCGATTACGTGTCTAGTTTGAACCAGCTCTATGAGAAATACAAGTCTGCTGAGCAAAATGTGGCGTTTGTAAAGCACATCGATCAGATGCTACAGCGCCACCTGCTGTTCCGCAACACCCTAGAAGAACGACTGACCACGGATGAGAGAAGCTGTGCTGCCGGGGATGCTTTTCTTAACCTCACTGGACAGAACGATAAGTCTTTCTCTGATGCATATCTTGGATACGTTGCCGGTCTGGGAACTGTCCTGAGAAGAGAGATCAGGGCAACTTCACCCCACAGCAATCCACAAAATGCAGAGgaggagaaagagagctTCAGATTGCTCTCGCTACTGTTCGCTCCTGTTTCCCGCATCCACACATACCTGAACATCATACAGGCCTTGTTACGCAGCTCTGGCGCTGGGCATGCAGACTGGTGTTCACTACAGGAGAGCGAGCGGGCGCTGTGGGGCCTCTGCACAAGCTGTCACATGACACTGGCGAAGGCGGGGCCATGCGAAGAGGGGGTGGGGCCTGAACAAGGTTTGAGAAGCAGGTGCTGCGCCGAGAGCCCCGACTGTGGCCCTTCCGCTTTTACCAAGTACTGTGCCAGCACTAATGCGGATACAGCCAGCGTCGCAGCAGGCGCAGGCATAGACAGCACTGTACACCAGAGGAAATGCTGTCGTGTTGGCATTTCACGGACGCTGCCTCGGCCCAGTGGCATTTTAAGAAATGGCCGAGAGCATATGTGTGATGTGCCCCCTGGTGGCTGGACAGCAGAGTACATGTGGAATGGCAGCGCAGGGCAGAGCCACACGGGTCCCATCTGCGTCCCCTTCCCTCGTCATCCTAGAGAAGCCGGGCTCTTTCTGAACCGCGTGCCACCTGTAGGTGTCGGGGGAAACCTCAGCACTGCTGCCAAGAGTCAGAGCTCCTCGGCTGGTCTGGCCGTGCGCGTGTGTGGCTCCCCGGGGCTCAACGGACGGGTGTACGCCTCTGAGCTCTACCCTCCGCCGCATCGTCTCGATGACGGGGACACAGACTGCGACGTGGCCGACGCATCCGTTTTTGACTTCTCTTCGGTAACGACCTGCAGCCCGGATGAAACTCTGAATCGGCTCCGGGGAGCGGAAGCGCgagatgatgaggatgatgatgaagaggacAGCGAGGTTCCAGTTCTCCTCAAACCCTCGTACACTCACAACGCTTCAGCCGCGCAGGCAGGGGGAGCATTGTGCATGCAGTGGCAGATTCCCAGGCGGGCTCCTATTCCTGCCGAGGTTCGCATTGGAGCGCAAGGAAAGACACGTGCCCCGAAACCACACAGAATCCCCGCCAGTGCCTTCCGGCCGATTTGGGACCCGgcttactcacagGGCGATGCGACTCCTGCAAAAGAGAACTCTGTGTCTTTCAGTGCAACCAATCAGATCATTAATCAGCAGCAAGAGACCGACCAATCACGATCTGCATACAGAGGGACTGGAGTCCAGCGGGCTGAAGCGGTGTGGCATGACAGTGAAGACAGCGAAGGGCCCTGCAGTACAGTCTGACACTGATGCAACTAACCATACACAGGGAACGCTTCTACTTCATCCAATGAAAtagttggaaacttttttttaaaaaatctgaaattacaAATGACGACTACTACTCACTGTGAACTGACATGAAGCCATGACCAGCGCTAAATTCAACATCTTAAGCATGATGTGATTTGTCAGAGAGAAATTTTGATGTAATAGAATGCACATAAACTGAGGAATAAAAACTTTCAGTAGAAAATAA
>XM_043252448.1
CGACACCAGAGATACCGGACACCGGGAGACGACAGCGCAGCGAGAGACGgtgaactacaaaaaaaaaaaaaaacatgaggcCGTCACTATGTCAAAGAAATGGAGtaacatttaaacttaaaaagaaatCTTGAAGATCTTTGTGGGTGGAGCTCTTTGGCAGGTATCTTTTCTTCCACCTGGGATCCGCTGACAGGGCGACCAGctctagAAAATGAAATCTCACGAGGGAGAACTGGAGAGAGAGATCTCTAAGGTTCAGGGCATGGTGTGTGAGCTGCGGGCAGGGTTTTCTCGTGCGCTGCTGGAGCTGAATCAGATTCAGCAGGGAGACACTGAGCTGCAGAGCCAGCTGGAGGACACAAGGCATGGCTGCAACAAGCGCGCCCTTCACCTTGAGAGTCTGGTGCTTTCCCTCAAGgaggagctggaggaggtaCGCTGTCAGTTTCGTCAACTCTGTGAGACACAAGACAGGAAACCACCGGAGAATCCAGGAATAGAGAAtAATGGAGTGGATGACAGTAGCGGACAGAGTAATGGTGCAGCAGAGGCTCCTCCCCTTTCACCTGTGGGCGGAGATTTCCTCATACACTGTTACCTGCAGGGATTACAGGTGTGGCAATGGGCCAGACAGAATACAGGTGCGGATTCTCTTTCCTGCCACGTGACACACAGCTGCCTGCGGCGGGGCAGGAGGCGGGGTGTGGTGGAGATGCTGCTCCGGTCTGAACGCGATTACGTGTCTAGTTTGAACCAGCTCTATGAGAAATACAAGTCTGCTGAGCAAAATGTGGCGTTTGTAAAGCACATCGATCAGATGCTACAGCGCCACCTGCTGTTCCGCAACACCCTAGAAGAACGACTGACCACGGATGAGAGAAGCTGTGCTGCCGGGGATGCTTTTCTTAACCTCACTGGACAGAACGATTCTTTCTCTGATGCATATCTTGGATACGTTGCCGGTCTGGGAACTGTCCTGAGAAGAGAGATCAGGGCAACTTCACCCCACAGCAATCCACAAAATGCAGAGgaggagaaagagagctTCAGATTGCTCTCGCTACTGTTCGCTCCTGTTTCCCGCATCCACACATACCTGAACATCATACAGGCCTTGTTACGCAGCTCTGGCGCTGGGCATGCAGACTGGTGTTCACTACAGGAGAGCGAGCGGGCGCTGTGGGGCCTCTGCACAAGCTGTCACATGACACTGGCGAAGGCGGGGCCATGCGAAGAGGGGGTGGGGCCTGAACAAGGTTTGAGAAGCAGGTGCTGCGCCGAGAGCCCCGACTGTGGCCCTTCCGCTTTTACCAAGTACTGTGCCAGCACTAATGCGGATACAGCCAGCGTCGCAGCAGGCGCAGGCATAGACAGCACTGTACACCAGAGGAAATGCTGTCGTGTTGGCATTTCACGGACGCTGCCTCGGCCCAGTGGCATTTTAAGAAATGGCCGAGAGCATATGTGTGATGTGCCCCCTGGTGGCTGGACAGCAGAGTACATGTGGAATGGCAGCGCAGGGCAGAGCCACACGGGTCCCATCTGCGTCCCCTTCCCTCGTCATCCTAGAGAAGCCGGGCTCTTTCTGAACCGCGTGCCACCTGTAGGTGTCGGGGGAAACCTCAGCACTGCTGCCAAGAGTCAGAGCTCCTCGGCTGGTCTGGCCGTGCGCGTGTGTGGCTCCCCGGGGCTCAACGGACGGGTGTACGCCTCTGAGCTCTACCCTCCGCCGCATCGTCTCGATGACGGGGACACAGACTGCGACGTGGCCGACGCATCCGTTTTTGACTTCTCTTCGGTAACGACCTGCAGCCCGGATGAAACTCTGAATCGGCTCCGGGGAGCGGAAGCGCgagatgatgaggatgatgatgaagaggacAGCGAGGTTCCAGTTCTCCTCAAACCCTCGTACACTCACAACGCTTCAGCCGCGCAGGCAGGGGGAGCATTGTGCATGCAGTGGCAGATTCCCAGGCGGGCTCCTATTCCTGCCGAGGTTCGCATTGGAGCGCAAGGAAAGACACGTGCCCCGAAACCACACAGAATCCCCGCCAGTGCCTTCCGGCCGATTTGGGACCCGgcttactcacagGGCGATGCGACTCCTGCAAAAGAGAACTCTGTGTCTTTCAGTGCAACCAATCAGATCATTAATCAGCAGCAAGAGACCGACCAATCACGATCTGCATACAGAGGGACTGGAGTCCAGCGGGCTGAAGCGGTGTGGCATGACAGTGAAGACAGCGAAGGGCCCTGCAGTACAGTCTGACACTGATGCAACTAACCATACACAGGGAACGCTTCTACTTCATCCAATGAAAtagttggaaacttttttttaaaaaatctgaaattacaAATGACGACTACTACTCACTGTGAACTGACATGAAGCCATGACCAGCGCTAAATTCAACATCTTAAGCATGATGTGATTTGTCAGAGAGAAATTTTGATGTAATAGAATGCACATAAACTGAGGAATAAAAACTTTCAGTAGAAAATAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107654948 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252447.1 True 2516 mRNA 0.54 16 10726151 10734638
XM_043252448.1 False 2513 mRNA 0.54 16 10726151 10734638

Neighbor

gene id symbol gene type direction distance location
LOC122354281 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 4552 10716529 ~ 10721599 (+)
LOC122354282 gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 coding upstream 10901 10711448 ~ 10715250 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 460466 10259698 ~ 10265685 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652 coding upstream 846944 9870254 ~ 9879207 (+)
nxph2b nxph2b,LOC107686003,LOC107551792,LOC107715780,LOC107572939,LOC107687746,LOC107718217 coding upstream 935525 9785040 ~ 9790626 (+)
LOC122354395 hrasls,LOC107569888,LOC107713876,LOC107693015,LOC108435900 coding downstream 26219 10760857 ~ 10761894 (+)
LOC122353582 NA coding downstream 303505 11038143 ~ 11042220 (+)
LOC122353580 NA coding downstream 306223 11040861 ~ 11051215 (+)
LOC122353583 LOC107747909 coding downstream 321744 11056382 ~ 11080781 (+)
gemin6 gemin6,LOC107682381 coding downstream 410551 11145189 ~ 11146821 (+)
G80641 NA non-coding upstream 31513 10694116 ~ 10694638 (+)
G80632 NA non-coding upstream 97192 10628554 ~ 10628959 (+)
G80630 NA non-coding upstream 150157 10575404 ~ 10575994 (+)
G80621 NA non-coding upstream 155938 10567207 ~ 10570213 (+)
G80562 NA non-coding upstream 278366 10446450 ~ 10447785 (+)
G80700 NA non-coding downstream 176551 10911189 ~ 10911883 (+)
G80705 NA non-coding downstream 346708 11081346 ~ 11082289 (+)
G80706 LOC102201770 non-coding downstream 348758 11083396 ~ 11084687 (+)
G80719 NA non-coding downstream 359793 11094431 ~ 11139033 (+)
G80730 NA non-coding downstream 375899 11110537 ~ 11111834 (+)
G80638 NA other upstream 64181 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 254964 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1186030 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1300849 9422950 ~ 9425302 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 1746910 8891450 ~ 8979241 (+)
G80761 NA other downstream 487709 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 771015 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 790385 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 794081 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 845388 11580026 ~ 11672957 (+)

Expression


Co-expression Network