zrsr2 (zrsr2,LOC107753840,LOC107729896,LOC107602790)


Basic Information

Item Value
gene id zrsr2
gene name zrsr2,LOC107753840,LOC107729896,LOC107602790
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14367171 ~ 14373481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252458.1
TAAAGGTGACGTAATCTTTGCGCGCGCTGGTGTGATCAGTGTGAAATGTGTTGCCTTTATTCGGCGGTTTGACGTTATTGCCTCCCGACGAAACATGTaaatagtgttttaaaatgacgaACAGTAACTGTTGCTCGCTTCAGACGGTCCCGCCGGAGCTGCAAGACTCTCAGAGTCGGTTGAACGAGTGTGAGAGTGCTTCTGTTGTGCTCAGTCAAAAACAACGACGAGCTATTCTGAAAcgagaaagaaggaaaagaaaacgTCAAGCTGTTGCTAAATTAAGAATAGCAGATCATTCACAAAATGAAGAGCACCAAACTGAAAATGAGGAAGAACAGATGGCTGATGAGCAGAGTGAGCGATTACACCAGGAATGGCTGGAGAGGGAGAGAATTGCACAGGAAGAATTCAGGCTGAAAAGGGAGAGAGAAGAGGtggcacaaaagaaaaaggaggaaGAAGAGAGGAGGATCAGAGAGGAATGGGAGGAGCagcaaaggaaagaaaaagaggagcaGGAGCAAAAGgagcagaagaagagagagagagagGAAGCCGTACAGAAAATGCTGGATCAAGCAGAGAGTCAGCTGGAAAATGGTGGTCCTTGGAAAAACCCTGATGCCCCAAAGGATTATGGAACAGAAAAGGACAAGGCAAACTGCCCCTTCTTCCTTAAAACGGGTGCTTGTAGGTTTGGAGACCGGTGCTCCCGAAAGCATGAACACCCAACATCCAGCACCACTCTGATGGTGAGGGGGATGTTTGTGACCTTCGGGATGGAGCAGAGCAGACGTGATGACTATGACACTGATGCCAGTCTTGAGTATAGCGAGGAGGAAATGCACCAGCAGTTCCTGGATTTCTATGAAGACGCTCTACCAGAGTTCAAGAACGCAGGGAGGGTGGTGGTGAGCTGCAACTTTGAACCGCACTTGAGAGGAAATGTTTACGTTCAGTACGACACAGAGGAGAAATGTAGAGAAGCTTTTCTGATGTTTAATGGCCGCTGGTATGCTGGAAGACAACTGCAATGTGAATTCTCCCCAGTAACAAGATGGAAGACAGCCATATGTGgaCTTTTTGACAGGCGGAAATGTCCAAAGGGAAAACACTGCAACTTTCTCCACGTGTTCAGAAACCCAGATAATGAATTCTGGGAGGCGGACCGTGATCTTCATATGTCCCCCGATCGTGGTGGAGGATTTTCTAGTCGCCATTTAAGCAGCAGAGATGGAGCGCGGTCCCAACGTGCAAATAGTCCTGAGCACATATCCCAGCGCAGAAGGACAGATCGAAGGAGCCACAGCCGTGAGCGGTACGCTTACAGGGGAAGACGGAGCAGAGAGAGGCGGGGTCACAGTAGAGAGAGGCAGAGTCGCAGCAGAGGGAGACACAGCCGAAATGGGGAAAAGCATAGCCGGAGCAGAAGCAGAGAGAAAAGGAAATCAGAACAATCGATGACAAGGAGATCAGTGTCTCAGAAAGACCAATCTAAAAGGAGGAGCCGATCCAATAGCAGAGAGCGCTTAAAGCAAGGTGAATGTACATCAGCAGACCCGAGAAGATGGACGTCAAAATCGAACAGTCCAGAACGGGTGTCCAAAAACAGATCTGCGAAACGGAGGAGGCACAGGACGGAAAGCCAAAGCCCGGAAAACTCTGACCAGATGGATACACATCACCACAAGCACTCTAAAAAgagcaagaagaagaaaaagggcaaaaagaaacacaaaagaaagaagagtAAATCACACAGCTCAAGCTCGGAGTCGGACGAGGAGCGTGACGAGATGCCGGCTAAATCAGAAGAACGTACAGCTTCATCCGCAGATGGAGTAGAGACCACAGATTTAGATGGCTGTCATCCAGAAGAGGAAATCCATTGTGCTCTTACGGATGCTACCACCGTCACACAGTCTGGAtagattatattaaaatgtgtttatgtggtctTAAAGCTgctgttgttattttagtttgcaTAAAATTTTGCTGATGAAAACTTCctgtatatttgtaattaaatctaCTCCTTTCTGAAAGTCTTGGTGAGGTTCCAACATGTCACGTGGGTAAGCGGATATCAGGGACGATCTTATTTAAAGTGATATAAGCAGGACATATTTAATTCTATATTGTAACGTTCATTAGAGTAAAACAGATTAccaacaaagaaaaatatttgatgGGCACGCGATTCTGTCCCTCAGACGTGGATTGGATGGATATGAATCTCATATTCAGTTCTCCCTCCATTGAATCCACATGGCAGTGGCATTTGACTCTAAAGGAGCAAAGCTTAAGCAGATGAGATGAATTGGAGAGGTCTTGCCTTCACGACCTGAGAGAATGTATTGTGTATCAAtgaagtttatttgcaaaaacataactTCTTAGTAGTTGTTTAACCTAGTCAAaattgaaggaatagttcaaccaaaaattttaattctgtcaacatttactcaagcctgtatgaatttatttgttctgaCCAACACAGAGGAAgacattttggggaaaaaaaggaagaaatactatggaagtcaatggtgacccaaaaacagcctggttacaaacgtCCTTCAAATTatctttgtgttcggcagaacaaataaaaacatacaggcTTGGAACTCCGTAAGGTTGAGCAAATgttgacagaattaaaattttgtggttaactattcctttaaaaataaccCAACAGCAGACTGATTGgtaatacacaataaaaaaaacagtttttatctgtttttgcaaattaactctttgtataatttattttaattgatttattaatcaaaaacgTCTGTGGAAATCCGTGttgtaaaacaaatttatttatgattGGATTCAATTATTCTGTCTGTTACCGAAATCAGAGGGTCCCTGTTAAAAGGatcgtttttttcttcttttttttatgcataaatgtatatattttgtgttggtGACCACAGTTTTCAGTCCCTCATAGTATGGGAAACAAACAATGTTAAAGTCAGTAGAGACCAGAAACTTTATTTACCAAGATTCTCCAAAATGTTTTCTATCTTCaccttcatttttgggtgaaccgtcctTTTAAGATACACTTCCGCACTTTCCATTCAACGACGAGTATGTgtactaaacatttttatcGGTAAAAGATCATTAAAGATTGGCACAACGCGCTGCAG

Function

symbol description
zrsr2 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to several human genes including ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2).

NR:

description
PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K24273 ZRSR; U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252458.1 True 3194 mRNA 0.43 11 14367171 14373481

Neighbor

gene id symbol gene type direction distance location
LOC122354669 comp,LOC107680551,LOC107747026,LOC107733073,LOC107665851 coding downstream 468006 13889911 ~ 13899165 (-)
ddx49 ddx49,LOC107747066,LOC107757937 coding downstream 500777 13862231 ~ 13866394 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding downstream 504959 13859905 ~ 13862212 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding downstream 768268 13597389 ~ 13598903 (-)
LOC122353919 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding downstream 836773 13528932 ~ 13530398 (-)
txlng txlng,LOC107562084,LOC107753838,LOC107656109,LOC107665847,LOC107723067,LOC107602792 coding upstream 8546 14382027 ~ 14391444 (-)
elovl1b elovl1b,LOC107665848,LOC107656106,LOC107753833,LOC107562086,LOC107602768 coding upstream 114896 14488377 ~ 14511622 (-)
mast3b LOC107753827,LOC107723058,LOC107656100,LOC107692230,LOC107572946 coding upstream 186420 14559901 ~ 14589170 (-)
si:ch211-1a19.2 NA coding upstream 277784 14651265 ~ 14653122 (-)
sid1 NA coding upstream 279955 14653436 ~ 14654520 (-)
G81841 NA non-coding downstream 51473 14313769 ~ 14315698 (-)
LOC122353702 NA non-coding downstream 188721 14177864 ~ 14178450 (-)
G81834 NA non-coding downstream 237031 14122476 ~ 14130140 (-)
G81791 NA non-coding downstream 586301 13780656 ~ 13780870 (-)
G81701 NA non-coding downstream 588761 13777617 ~ 13778410 (-)
G81846 rbb4l,LOC107562083,LOC107753839,LOC105893332,LOC103023991,LOC106943324 non-coding upstream 1229 14374710 ~ 14375944 (-)
G81873 NA non-coding upstream 105029 14478510 ~ 14479111 (-)
G81874 zfyve9b,LOC107723065,LOC107753830 non-coding upstream 105716 14479197 ~ 14479429 (-)
G81875 NA non-coding upstream 108679 14482160 ~ 14482579 (-)
G81876 NA non-coding upstream 109538 14483019 ~ 14483431 (-)
G81829 NA other downstream 62047 13885683 ~ 14305124 (-)
G81799 NA other downstream 75662 13850335 ~ 14291509 (-)
G81650 NA other downstream 667213 13698099 ~ 13699958 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other downstream 757567 13606272 ~ 13609604 (-)
G81663 NA other downstream 773617 13572731 ~ 13593554 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other upstream 69120 14442601 ~ 14451740 (-)
G81866 NA other upstream 161237 14534718 ~ 14536392 (-)
G82067 NA other upstream 831480 15204961 ~ 15214058 (-)
LOC122354561 NA other upstream 860452 15233933 ~ 15235436 (-)
LOC122354564 NA other upstream 1027437 15400918 ~ 15401691 (-)

Expression


Co-expression Network