si:ch1073-456m8.1


Basic Information

Item Value
gene id si:ch1073-456m8.1
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 386034 ~ 394186 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252461.1
TCGAGAGGCAGGACCCACCCGAAACCGCGGCCCCGTCCTCCGGCGGAGAAACTCTTGAAGACACGGACTCCTCGGACACTTTCTCTGGACGCTAAGAGAGTCTTTACGCGGGAGAAGATGCATTCCGGTAACCTGGAGAAGACGGGCTCCCTGAGGAAACGGACTCTGTCTCGAGGAATGAGCGAAGACGAGTCTCTGCGACACATCATCAGAGACGCGGAGGAGTCCCGCAGCGACAGCAGATACGGCTCGCTAAGAAGAGGACAGCGGCAGGACAGTCACAGTGAAGATGATCTGCTTTCTGAGAACATAGAAGAGGTGGAGCTGAGAGCGAGCTTCGAGGAGGTGAGGGCTCTGGAGCTGCAGCAGGAGGCTCTGCTCTTCCAGGTGGACTGTCTTCAGGACGCCCTCCAGAGCACCGAGGAGATGCTGGCCGAGACCCAGAGGGACAACCACAGGCTCATCACGGAGCTGGAGCGCGAGCGGGAGGCGAGGAGGAGGTCGGAGGAGGCGCTCGCCTCGTTACGGCGGGAGCTGCAGAGCTTCAGAGAGGAGGGACCCCACGAGCCGCTTCAGTCGAGGGCCTGCTCGGGGCCCGTCTGGCTCCGGGCCCCTCCGGAGGGGTCCTCAGTGGACGGGGACACACGCAGCGGAGGCTCCTCGGTGGATCTGGACCCCGGGCGGCTCTTACAGCCGAAGACGCTTCACGTCCAGAAGCACGAGGCTCCGGGAGCCGACGACTACGACGAGAGCAGCGGCTACGAAGACGCTCCGTCCGAGTTCTCCCCCGCTCCGTCCACTCCGGACACGCAGCCGGACGCCGCTCTGCTGGACAGCGAGGCCGAGGACGGAGGGCCCGAGAACAGCCTGGCTAAAAGTACTGACTCCTGCGCTCTGTCCTAAACCCCGTCTGAGATCCGTCCTCAGGCAGCCTTGCACACACCTTCAGACGAAGACTACTTTCTTACAGTCACTTATTGAGGGAAAGAAGGACTCTCTCTTCCGGTGGTTTTTATAGCTGTGTTTGTGCTGGATTTCTTACGTATCTCTTCCTCTGCTATTAAACGAGCAGGGAGAGGAATTTTAGACGCTTCACAAAAACATGTGCTTTCGGTCTCTCTTTCATCTTTTGGcaagtaatattaataacccAGTGTATTTGTGTAAGAGCAACCTGATTCCAGGCCATTATTAACATGCTTTTCATTTGCTGCATGTAGTTCTGAGAGTTTGGAGCCCCCTACAGTTAAGTGAGAGAACTACAAGTAATTACAGTAATCCTGGAGCTGGACACCGCCGGGAATCAGCGTAAAAGAATGATTTCAAAACTAAACATCTTTTACTAAGAAGTCGAGACCGTTTTCTTCTTGTAACTCCAGACTGACAAAcaggttttctcttttttttcattaaagctgcagtccgtaacttttttgttgaaaaatgatccaaaataatatttgagagtacatatacagtaaatattccTGTATTCAAAGACAGATTCAAAGAGCAGAACCCACACAAGAACGATAGCGATGAAGTGAACGTCTAGCTGCTAGTTCTTCATGAAGAAACAGAGGTGTGCTAATGTTTGTCTTGAaggtgtatttttaatattgctgtttttttcatctATACACTGAGTAACACGCTAGATTTATAAATCTTGTGCTTTCGATTCTTAACTTCATGTcattttttctgaatttcacGACAAATTGGTTTGAAGCATTTTTCTGATTGAAGAAAAGCGTCCTTGTTTTCTAGTTCTTCTCAGGGAATTTCTAATACGTTCTGATTCCTTACTAATGACGTAAGTGTCCTGGCTTCCAGACGATCTAACACAAGAACTCTAGAAGAACCGGTTCTGAAATGAGCGAGATGTTTGAGGATCTTCTGAAATGGTCTGCGCTCAAAATGGATgtcatttttaactgtttacaAACGTGTTCAGCGTGTGATATCAGAAATGAACTTAGCTGGACGAGGGTGTACGTCTATCAGTGTGCACTGCTCCTTTATTCACGTGTGAGTGACACACACCTCACTTCTATCTGATTCTATCTgtcttttttctcattttgtcgTTCTAACATCAGACCTGAAGTTTAGTCTCAGTTCTCAatctttaatagtttaaatgaaGTGTTCccagtatatttatttgatctgtATGGATGTAATCTGCATGAGTTTAAATGCCTTCATCTTCCTCACTTCTAAAGTTTCTGTAGTTTTCTTCACCGGAGGACACCTTTTCAGGGATGTGCCGCAGAGTGATTTGAGTCTCTGATACTCTGCCGTTTGACACTATTTGTGGTGGACAGTAAAATGAGTGACCGCCGAAGAGCTGACAGAGACCTCATCAAACACCTGTCTCTAAACCTTTCCGTTTCAtgcttgggtttttttttttttaaagctgcattaaGAGTATATAATGTTTGTAAATcgatatgcaaaataaaatattttgaatgtttcaaa

Function

NR:

description
leucine-rich repeat flightless-interacting protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252461.1 True 2490 mRNA 0.48 6 386034 394186

Neighbor

gene id symbol gene type direction distance location
avil avil,LOC107567939,LOC107684013,LOC107711597,LOC107698837,LOC107574443 coding downstream 710 374160 ~ 385324 (-)
tegt tegt,LOC107574446,LOC107567938,LOC107684007,LOC107713865,LOC107711598,LOC107698838 coding downstream 13562 367846 ~ 372472 (-)
cdk4 cdk4,LOC107747701,LOC107701179,LOC107567936,LOC106583286 coding downstream 39616 339095 ~ 346418 (-)
LOC122353956 LOC107751587,LOC107552203,LOC107696908,LOC107714543 coding downstream 95684 289980 ~ 290350 (-)
LOC122353951 arfgap1 coding downstream 199183 179559 ~ 186851 (-)
LOC122353667 cyp27b1,LOC107747831,LOC107561793,LOC107684010 coding upstream 11835 406021 ~ 412585 (-)
mettl1 mettl1,mettl1-b coding upstream 20216 414402 ~ 425665 (-)
vgll4b vgll4,vgll4b,LOC107750033,LOC107697562,LOC107570332 coding upstream 517489 911675 ~ 933876 (-)
tamm41 tamm41 coding upstream 539666 933852 ~ 939272 (-)
LOC122353727 NA coding upstream 583411 977597 ~ 980116 (-)
G78132 NA non-coding downstream 82816 160995 ~ 303218 (-)
G78150 NA non-coding downstream 113070 271740 ~ 272964 (-)
G78149 NA non-coding downstream 114677 270980 ~ 271357 (-)
G78140 NA non-coding downstream 148135 237488 ~ 237899 (-)
G78109 NA non-coding downstream 317765 67765 ~ 68269 (-)
G78162 NA non-coding upstream 36808 430994 ~ 431422 (-)
G78164 NA non-coding upstream 37501 431687 ~ 438660 (-)
G78167 dusp7,LOC107561798,LOC107677944,LOC107697567,LOC107712495 non-coding upstream 64107 458293 ~ 506641 (-)
G78192 NA non-coding upstream 198429 592615 ~ 594641 (-)
LOC122353904 NA non-coding upstream 325089 719275 ~ 721631 (-)
LOC122354324 arfgap1 other downstream 56995 322213 ~ 329039 (-)
LOC122353949 prph,LOC107683634,LOC107730884,LOC107696041,LOC107737370 other downstream 97088 282263 ~ 288946 (-)
LOC122354323 LOC107706475,LOC107589231,LOC107700775,LOC107591713,LOC107703600,LOC107722831 other downstream 105457 274866 ~ 280577 (-)
LOC122353952 cdk4,LOC107747701,LOC107567936,LOC107701179,LOC106583286 other downstream 160203 217174 ~ 225831 (-)
LOC122353669 mettl21b,LOC107684011 other upstream 8754 402940 ~ 405411 (-)
G78144 alas1 other upstream 49699 443885 ~ 448901 (-)
G78170 NA other upstream 58948 453134 ~ 455998 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other upstream 204921 599107 ~ 794136 (-)
LOC122353728 NA other upstream 578768 972954 ~ 974787 (-)

Expression


Co-expression Network