hoxc13b


Basic Information

Item Value
gene id hoxc13b
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1536027 ~ 1538014 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252502.1
ATGGAGGGAGTGAGAGGGAATCGCTGTGGTTTCAGCTCTCTCTCTGCGGCGGGACGCGACTCTCGAAATTTCTCCAATCGCCAGAGTACGGTGTCCCCGGGCATCACCGCGCAAGACGGCCAGGCCTCCTCGGGCACATCACTGAGCTATGGACACCCATTTGGAAGTCCATATTATGGACAGAAAGCGTATTCCTATGATCCTGCCGAAAAATACATGGAGTCGAGCAGCACGCTGCCAGCTGAGGAGCTTTCCAACCGGCCCAAAGAATTGAGCATTCACCCAAGTTTCGTACCAGGAGTCAGTGCGGACCCAGAGACAAGGCATGAAACTTCAGTTCCTCTGGACAGGTATCAGCACTGGGCCAAGACGATCGGCTGGGACGAGGAACTATACTGTTCTAAggaacaaacacattttaaccaCCTGTGGAAGTCCACGTTTTCGGATGTGGTGCCACACCAGACCGAGATGAATGGGTTCTGTCGTGGTCGTAAGAAGAGAGTACCTTACAATAAAACTCAATTGAAGGAGCTGGAAAGAGAGTACGCCACCAAGAAATTCCTCACCAGAGACCAACGAAGGCGTCTCTCCGCCGCAACCAATCTCTCGGAACGGCAGGTGAACATCTGGTTCCAGAACCGTCGTGTTAAGGAGAAGAAGTCAGTGTCTAAAGAAGAGTTACGCTCCCACGTGCATGTGCATTAATCACATAGCGCCGATCAAttctgcatttaaaagaaaaaagtcaacACACTCGTGTCTCAATGTTGGCTTCTGGAATGCTTTAAAAACGGTCTGGTGATTTTCTTTTTCGAACAGATCTTCTGTTTAGTTTGGTTTTGCCtcgtttggtttagtttttgttctagttgtgactttaaagaaaaactgtcTATCCAAACGTAATGTTAATTGTTGAATAAGTTTTCtaagttttcttctttttttgcatttttgatcCATTTATTCGGTATTCTCAtggggttttttcttttttttcctttttttatggaAACGTATTAAATTGGGGATGCTATTACCTTTCATCTACATGGATCTACGAGTTCACTGAACATGAAGTGTTTCTTGGTAACAGCGGCGATCAAGTCGAAACTTGTGTCACATGGTCCATGAACAATTTGCAGAAGTCTGCCCTATATCTTGTTTTTCTTGGCAAAAACTGTTGCATATGACTACCTCCAGTGAGCACTAGTGAAtccatat

Function

GO:

id name namespace
GO:0031101 fin regeneration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252502.1 True 1227 mRNA 0.45 2 1536027 1538014

Neighbor

gene id symbol gene type direction distance location
lrp1aa LOC107654787,LOC106565466 coding upstream 121228 1308673 ~ 1414799 (+)
LOC122354215 LOC107654785 coding upstream 235228 1291107 ~ 1300799 (+)
dtx3l2.2 LOC107654785 coding upstream 245823 1285110 ~ 1290204 (+)
mybl2b mybl2,mybl2b,LOC107654799,LOC107670940 coding upstream 251074 1277780 ~ 1284953 (+)
ift52 ift52,LOC107730620 coding upstream 260014 1270083 ~ 1276013 (+)
hoxc6b LOC107551320,LOC107707362,LOC107660782 coding downstream 5608 1543622 ~ 1544764 (+)
lima1b LOC107707364,LOC107687370,LOC107754562,LOC107551335 coding downstream 63693 1601707 ~ 1618526 (+)
igfbp6a LOC107718979,LOC107687374,LOC107696018,LOC107730876,LOC107557535 coding downstream 93813 1631827 ~ 1633704 (+)
pip4k2cb pip4k2cb,LOC107730889,LOC107557542 coding downstream 97873 1635887 ~ 1643236 (+)
ube2v1 ube2v1,LOC107572061,LOC107683645,LOC105022328,LOC106572481,LOC103044311,LOC108425074 coding downstream 106884 1644898 ~ 1650340 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding upstream 6870 1524347 ~ 1529157 (+)
G78471 LOC107551319 non-coding upstream 11949 1521976 ~ 1524078 (+)
G78479 NA non-coding upstream 21849 1513879 ~ 1514178 (+)
G78468 NA non-coding upstream 53878 1479174 ~ 1482149 (+)
G78467 NA non-coding upstream 64643 1469668 ~ 1471384 (+)
G78484 NA non-coding downstream 20846 1558860 ~ 1562656 (+)
G78490 NA non-coding downstream 34580 1572594 ~ 1575125 (+)
G78517 NA non-coding downstream 131008 1669022 ~ 1669695 (+)
G78540 NA non-coding downstream 228357 1766371 ~ 1766589 (+)
G78625 NA non-coding downstream 263337 1801351 ~ 1802313 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other upstream 18064 1485707 ~ 1517963 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 87067 1419520 ~ 1448960 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 344306 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 458628 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 495788 1034409 ~ 1040239 (+)
G78500 NA other downstream 52730 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 106617 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 140212 1678226 ~ 1681200 (+)
G78763 NA other downstream 1140121 2678135 ~ 2680142 (+)
G78790 NA other downstream 1287525 2825539 ~ 2826794 (+)

Expression


Co-expression Network