mmp19 (mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650)


Basic Information

Item Value
gene id mmp19
gene name mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1778309 ~ 1786347 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252505.1
ATGGCTAAGTGGGTGCAATATACAATATTTCTGACTGCTGTTCTGCGCGTATGGTCATCTACTGAGACGAGCAGAAAGCGAGAGTTCACAGAGGCGCAGATGTACCTGAGGCAGTTTGGATATCTAGATACTCCCCTGAACCCAGAAGCTCAGAGAGATTCCAGTGAGTGGGCTATGAAAGTGGCTCTCAGTCTTTTTCAGAGGGTGTCAGGGTTGCCTGTCACTGGAAATCTCGACGGAGCTACTCTTCTTAAAATGAGACAGCCACGGTGTGGTGTCGAGGACCCATTTAACCAAAAGTCTTTAAAATTCAGGAGATTTGGTGGATTTTGGCGAAAGAAAAACTTAACGTATCGCATTCACAACTACACACCAGACATGGGGAAAACGGCAACACAGACAGCAATACGCTCAGCATTTAAATACTGGAGTGATGTCACCCCACTCAGCTTTAAGGAGATTAATTATGGACTCGCTGATATTCGAATCTCATTTCACAAGAGAGATGGCTGTCCTTCACCTTTTGATGGTCCTGGCCATGTTCTTGCCCATGCAGAAGCGCCTCCATCAGGAATAGTTCACTTTGATGAAGATGAATTCTGGACTGAAGGAAAGTACTATGGTTCCAATCTGCGTATAGTTGCAGCTCATGAGATCGGCCATGCTCTTGGCTTGGGACACTCTCAGTACAGCAGTGCTCTTATGGCAGCACACTACACTGGTTACCAAGCCAATTTTAGACTGCACATCGATGATATCAGAGGAATCCAAGCAATATATGGTAAAAGGATCTCTAGTACAACCACTGCTGATGATATCTATGCCATGACATATCCCACTACCATGGCACCATTCCCCAGAGGTGATATGCTAGATCCATGCACTGCTAAACTAGATGCTATAATGCTGGGTCCCTCGCATAAGACGTATGCTTTTAGTGGGGATTATGTGTGGACGATAACAGATATGGGTCATAACTCCCTGGTAAAAATAAGTTTGCTATGGAAGGGGCTGCCAGGAAACCTGGATGCAGCTGTATATTCCCCAAGAACCAACAAGACATACTTCTTTAAAGGTGAAAAAGTCTGGAGGTTCACAAATTACCGCCTTGACTATCGATATCCTAAACCTCTAAAAAGAATCCCTGCCAACATTGATGCTGCTTTGTATCATGAGAAGAACAAGAAAATTTTCTTCTTTAAGggctCAGGCTATTGGCAGTGGGATGAAATGGTTTATAATGACCTCAGCATTTATCCCAAACCCATTTCACGTCTGTTTCCTGGCATCCCCTCAAATCCTGATGCAGCTTTCACGTGGACCAATGGGAAGATGTATTTCTTTAAAGGTGACAAGTACTGGCGCATAAATGAGCAGTTAATTGTTGATTCTGGATACCCACTCAGCAAGCGTGTCCGCTGGATGAGGTGCAACTAA

Function

symbol description
mmp19 Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP19 (matrix metallopeptidase 19).

NR:

description
matrix metalloproteinase-19-like

GO: NA

KEGG:

id description
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252505.1 True 1437 mRNA 0.45 9 1778309 1786347

Neighbor

gene id symbol gene type direction distance location
LOC122353575 sarnp,LOC107696044 coding downstream 12235 1762575 ~ 1766074 (-)
inpp1 inpp1,si:ch211-160o17.2,LOC107737355,LOC107683640,LOC107730897,LOC107562242 coding downstream 48470 1725270 ~ 1729839 (-)
cnpy2 cnpy2,LOC107572063,LOC107557548 coding downstream 77851 1697584 ~ 1700458 (-)
dgkab si:ch73-267c23.10,LOC107737366,LOC107696033,LOC107557543,LOC107730898,LOC107683646,LOC107557545 coding downstream 100114 1664162 ~ 1678195 (-)
slc2a10 slc2a10,LOC107696032,LOC107737362 coding downstream 116345 1657296 ~ 1661964 (-)
pmela pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442 coding upstream 3405 1789752 ~ 1797665 (-)
timeless timeless,LOC107689440 coding upstream 16398 1802745 ~ 1822748 (-)
gdf11 gdf11,LOC107573429,LOC107681455,LOC107683628,LOC107709533,LOC107562248 coding upstream 42060 1828407 ~ 1850291 (-)
LOC122354691 NA coding upstream 76340 1862687 ~ 1862826 (-)
LOC122354701 NA coding upstream 78660 1865007 ~ 1865147 (-)
LOC122354127 NA non-coding downstream 37291 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 264406 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 266077 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 266783 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 329304 1444615 ~ 1449005 (-)
G78726 NA non-coding upstream 137358 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 697323 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 701137 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 910062 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 910881 2697228 ~ 2697472 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 62180 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 81522 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 518219 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 803522 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 984173 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1027005 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1033241 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1050936 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 1051894 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 1052500 2838847 ~ 2838919 (-)

Expression


Co-expression Network