lhfpl5a (lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860)


Basic Information

Item Value
gene id lhfpl5a
gene name lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3454410 ~ 3456934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252514.1
ATGACTAAAATGCTATCGGCCCAGGAGGCTGCCAAGATCTATCACACAAATTACGTGAGAAACGCGAGGGCCGTCGGTGTGCTGTGGACTATCTTCACCATCTGCTTCGCCATCATCTGTGTGGTGGTCTTCATTCAGCCGTACTGGATTGGAGACAGTGTGGACACCCCTCAGTCGGGCTACTTCGGGCTCTTTCACTACTGCATTGGGAACCCCATCACAGGAGAGCTGGTGTGTAAGGGCAGTGCTTTGGACTTTGGATCCATCCCTTCGGGTGCCTTCAAAACCGCTATGTTCTTCGTTGGGATCTCTTTGCTGCTGATCGTAGGGACTATTGTCTGCTTTAGTTTGTTCTTCTTCTGCAACTCAGGCAGCGTTTACAAGATCTGCGCATGGATGCAGCTGGCAGCTGCGACTTGTATGGTCATAGGCTGCATGATCTATCCGGATGGATGGGACTCAGAGGAGGTGAAGCGGATGTGTGGTCAGCGGACGGATAAATACACGCTGGGTAACTGCACGGTGCGCTGGGCCTACATCCTGGCCATCATCAGCATCATGGACTCCCTCATATTATCCTTCCTGGCCTTCGTCCTGGGCAACCGGCAAGACAAACTGCTGCCAGAAGACTTTCAGGTGGAGGGGAAAAAAGGTATAGACCAAAATACAttacgaaataaataa

Function

symbol description
lhfpl5a Acts upstream of or within detection of mechanical stimulus involved in sensory perception; inner ear receptor cell stereocilium organization; and protein localization to cilium. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in anterior macula; hair cell anterior macula; hair cell posterior macula; and posterior macula. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to human LHFPL5 (LHFPL tetraspan subfamily member 5).

NR:

description
PREDICTED: tetraspan membrane protein of hair cell stereocilia homolog

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252514.1 True 684 mRNA 0.51 2 3454410 3456934

Neighbor

gene id symbol gene type direction distance location
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding downstream 68619 3381485 ~ 3385791 (-)
pusl1 NA coding downstream 155348 3285961 ~ 3299062 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding downstream 190296 3256879 ~ 3264114 (-)
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding downstream 395980 3052696 ~ 3058430 (-)
LOC122354702 NA coding downstream 398637 3055697 ~ 3055773 (-)
LOC122354690 NA coding upstream 221828 3678762 ~ 3678926 (-)
LOC122353608 LOC107658808,LOC107568054,LOC107750169 coding upstream 226875 3683809 ~ 3688280 (-)
cdh27 LOC107654208,LOC107730486,LOC107568064 coding upstream 234226 3691160 ~ 3702206 (-)
si:ch211-253b8.5 si:ch211-253b8.5,LOC107653378,LOC107568061,LOC107592587,LOC107680420,LOC107730476 coding upstream 247638 3704572 ~ 3715578 (-)
bmp7a bmp7a,LOC107730480,LOC107657209,LOC107568055,LOC107751030,LOC107658719 coding upstream 276048 3732982 ~ 3742362 (-)
G78969 NA non-coding downstream 39486 3412874 ~ 3414924 (-)
G78919 NA non-coding downstream 186735 3266756 ~ 3267675 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding downstream 187738 3266184 ~ 3266672 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding downstream 213091 3223735 ~ 3241319 (-)
G78903 NA non-coding downstream 221668 3231127 ~ 3232742 (-)
G79010 NA non-coding upstream 197348 3654282 ~ 3657289 (-)
G79069 NA non-coding upstream 259755 3716689 ~ 3719414 (-)
G79075 tmem38a,LOC107730482,LOC107702305,LOC107658508,LOC107751025 non-coding upstream 295996 3752930 ~ 3759723 (-)
G79083 nwd1,LOC107710443,LOC107658741,LOC107592553,LOC107655543,LOC107730478 non-coding upstream 323065 3779999 ~ 3780317 (-)
G79126 NA non-coding upstream 652170 4109104 ~ 4112070 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 198198 3253863 ~ 3256212 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 340718 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 406186 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 467879 2986458 ~ 2986531 (-)
trnaf-aaa NA other downstream 469293 2985044 ~ 2985117 (-)
G79003 NA other upstream 83067 3540001 ~ 3541055 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 356571 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 456314 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 505047 3961981 ~ 3965791 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 2282082 5739016 ~ 5765140 (-)

Expression


Co-expression Network