timeless (timeless,LOC107689440)


Basic Information

Item Value
gene id timeless
gene name timeless,LOC107689440
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1802745 ~ 1822748 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252517.1
AGGAGCGCGCCTTGCGCCGTGCGTGCTAGATGTTTTTTCGCCTTGAATCATAAGATAACTTTGGTTGAATTCGcttgctttcaaatgattaatctgaAACATATGAATGTTGTTAAACGGTTAACTGCGAGCGGAGATATCACCAATACTCTTTAGTGTTTCACAGATTGCTTATCGCAGGAAGATCTAATATGGTCTGatttGGACCACTTTTTCTCCCCCAATAGGACTGCTGTATGGACTTGTTCATGATGAACTGTGAGTTATTGGCAACATGCAGTGCACTGGGTTACCTGGAAGGAGATGTGTACCACAAAGAACCAGACTGCCTTGagaGTGTGAAGGATCTGATTCGTTACTTGAGACATGAAGATGACACGAGAGACATCAGGCAGCAGCTGGGAGCTGGGCAGATCCTTCAGAATGACCTCTTACCCATCATCACCCAGCACACGCAGGACAAACCTCTCTTCGATGCCTGTATCAGgATAATGGTGAACCTGACCCAGCCAGCACTGCTCTGCTTTGGAAAAGTTCCTGACGATCCGGCCTTCCGACATCACTACCTCCAAGTGACGTCATACCTTCAGGCCTATAAAGAGGCATTTGCAGATGAGAAGATTTTTACTGTGCTGAGTGAAACGCTCTATAACCTTCTGCAACTGgacTGGGAGCAAAGAACTGAGGAGGATAATTTACTGATTGAGAGAATTTTGCTGCTGGTTAGAAATGTGTTGCATGTCCCTGCCGACCCATACGAGGAAAAGAACGTGGATGACGATGCCAGCATTCACGATAAACTGCTGTGGGCCATACACATGAGTGGGCTGGACGATCTGCTTAAGTTCCTGGCGTGTGCTCagagtgaacagcagtggaaCTTCCACATCCTGGAAATCATCTCCCTCATGTTTCGAGATCAGACTCCTGAGCTTTTGGTGAATGCAGGACAGATACGCTCAGCCCAGGAGAAACAGAAAGACATGCAGGAGCTGGAGTTACTAAGACACAAGGAACTAGCAGAAAAACGCAGCCGCACGTTATTGAGAGGTGCCAGGCACTCTCGTTTTCGTGGCTCTTATGTCATTGAAGGACTGAAGTCCATTGGGGAGAAAGATGTGATTTTTCACCAAGGACTTCACAATTTTAAGAACTATTCTCATGATGTGGGTAAGGTTTTGAGACGTGTACCTAAACGCAAACAAATGGCTCAAGACTCAGAGAGCCAGCGACGCTCAGCGTTGAATGTTCGTCTCTTCCTGCGCGAGTTCTGCGTCGACTTCTTAGAGAACTGCTACAATCGACTCATGTACATTGTGAAGGAGGGGTTGATCCGTGAACGGGCGCAGCAGCATGATGAGACGTATTATCTGTGGGCTATAACGTTTTTCATGGCTTTTAACCGCGGTCAGAATTTCAGACCAGATGTGGTGTCTGAGACCATATCTATCCGCACCTTTCATTTCATTGAGAAGAACATCACCAACTACTACGAGATGATGCTCACTGACCGGAAAGATGCCACATCCTGGTCTCGCAGGATGCACTTGGCTCTGAAGGCGTATCAGGAACTTCTTCTGACAGTGAATGAAATGGATCGCTCAAAGGATGAAAACATCCAGCACAGTTCTAATGTAATAAAGAgcaatattttttatatgatgGAGTTCAGGGAGATTTTTCTGACTCTCTTGCGTAAATATGATGAGCGAATGCAGCCACGCTCATTTCTCAGAGATCTGGTTGAGTCCACACATCTGTTTCTGAAGATGCTGGAGAGATTCTGCAAGGGTCGAAACAATCTGGTAGTACAGAAAAAACGAGTGAAACGAAGAAAACGTAGCCAGAAGACGCTTCCAGCAGAGCCTACATCTGAAGACCTGGAGCAGACATGGCAAATAGTGTCTGAAGAGCTCAGAACATCTGGCTTTCAGTTATCGGAGAGTTTGACAGAGGGTGCTGTGCCCTTTGATGCCACGTCTGAGACTCCAGTGGAAGAGCAGAGGACCGAAGCACTGGTCAGGATTCAAGACTGTATAATGACTCGTGCAGGACCTGAAGCTTTGAGTTTACTCCGTGCTGCGCGGGCAGTGTGGCCTGAAGGAGACACATTTGGATCCGTTGAGGTCGAACCTGAGGAGGAACTAGAACTTCTGAAGCAGATACTGTTCACTAAACTCCCGAAATCGATGCCGTTAGATTCTGCTCTTGAGGAAGAGGATGGAGTTGAgttggaagaagaagaagagctggAGTCTGTCGCTGTGTCTGAGACGGAGTTCAACTTCTTAGATTTCATTAAGAGGTTTGCCAATCCAAATGTTGTTCGTCCGTACATTATCCTGCTGCGCTCGTACTCCCAGAACTCTGTTCACACCAATCACTGCATCACGCGTATGCTGCATAGACTGGCTGTGGACCTAAAGATGGAGGCATTACTCTACCAGTTGTCCGTCTTTTCCCTGTTTAATAAGATCTTGGGAGACCCAGCAGCGACCGCCTATCAGGAGCTTGTTACATTTTCGAAATACGTTCTGAACCGGTTCTTCGTATTTGCTTCCACAAACAACAAAGCGTTTGTGGAGCTGCTGTTCTGGAAGAACGTAGGTGCTGTAAGAGAAATGACGGAGGGATATAGCAAAGACGGgGAAGGCAACAAAAAAGGAAAGTGGACTCCTGAGGAAGAAGAACAGCTTCAGCGACTGTTTGAGGAATACAAGGACTCTGGAGTGCCAGATGTTGTTGAGACAATATTACCGTTGCTAAGCAGCAGCCACACTAGACGTGACGTGGTGTCTCACATGGTGTCCATGGGTTTGGTGGACAGTGTGAAggatttaaagaaagaaagGAAAGGTACTCGTATTGTGCTCTGGACTGAAGAGCAGGAACAAGAACTCCAGATGCTCTTTGAGGATTTTAAAGACTCTGATGATGTGCTTGGAAATATTCTAAAGCGGATCACAGCCAAGCGTTCAAGGGCACGAATAGTTGAAAAAATCCTCAGCATGGGTCTAGTGTCCGACCGCAGAGAGCTTCACAAGAAGAGAAAACGAAGTGCTCCTGGGAGGAGTACTGGAATGACAGAGGAGGAGTTCTTTGATTTGCCTGAAGAGTCACAGGACAAGGAACTGGACatagaggaagaagaagaggataAATCGGATGAAGATGAGCATGACTATGAAGAACATGTTGGTGATTCAGCCAAAAGAAGACAAAAGAGCACGAGTAGAGACAATGCTTTAGAGAAAAATCATAGTCTGAGAAAAATGGTCCAGACTTTAAAGCAAGAAGGTCTGTCAGGGCCTGTCCTGTGGCTACAGAATTCCCTTAACAGAACCGCTGATGACCGTGAGGAGGATGGTGTTTCTCATCCTGTGGCACTGGTTCCTCTGACAGAGGAGAACGAGGATGCTATGGAGAACAAGACTTTCCAAAAACTTCTGCGCACAGTCGGTATCCGTGCACCTGCAGATGGACAGGAGTCTTTCTGGAGGATTTCTTCCAGCCTGAGCGTGAATCAGCTGAGGTCATTAGCAGCATCTCTCGACCTGGTCGAGGAGACTGAAGGGGACTCTGAGGGAAACCAGGAGAGCAGTCTGACTGTCGAGATGGAGGATGATAATCAAGACACGAGAGCTCAGGCGCTGAGAGCTTTGCTGTTGTCACGCCAGAGGAAATGTCCCTCTTCCAAATCGAAGGaCTCTGTGTCATGTGAGGGCCGTTCTGATACTGTGGAACAAAGGGATCATTTAGAGGAGAAAATAtcaaagaagagaagaagagtgTTGGATGATGACGACGAAGATGATGATGATCTGAAAGATATTTCAGATGCGGATCCTTTATCTAGGAATAACTTTGAAAGAAGCATTGATTCAGACCACAAGAGTCCTGCTGCCCCGGCTAAGCGCAGATATACAAGAGTGTTAAGCGACGAAGAGGACGATGTctagaaatattaatacaataccAAATGGACCTCCcacctctttttttattttaagtgaatTATCAGTCTACCTTTAAATTTTGTTATCCTGTTACCCAGGAAAAGAATTGTTTGCCATATTTGaggtatttttaatattttggggaaatgtaatttcaaatgTCTTGTTCTACATgatttttggtttattgttgGTACACCAGCGTTCTCACTTCAGTGTCAACAATAATTGCTTTGATATCTCGCATTTCTACAGGCTTTGGTTAGCGTTACCTGTATAGTTCTTACACATAGAAACTTCTTGAGGTATATGGCTGTGCTCTTTGTATGTTAATAAAATTTACTGTATGAAACAGGTCA

Function

symbol description
timeless Predicted to enable DNA binding activity. Predicted to be involved in DNA metabolic process and DNA replication checkpoint signaling. Predicted to act upstream of or within rhythmic process. Predicted to be located in nucleus. Predicted to be part of replication fork protection complex. Orthologous to human TIMELESS (timeless circadian regulator).

NR:

description
PREDICTED: protein timeless homolog

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K03155 TIMELESS; timeless

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252517.1 True 4315 mRNA 0.46 30 1802745 1822748

Neighbor

gene id symbol gene type direction distance location
pmela pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442 coding downstream 5080 1789752 ~ 1797665 (-)
mmp19 mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650 coding downstream 16398 1778309 ~ 1786347 (-)
LOC122353575 sarnp,LOC107696044 coding downstream 36671 1762575 ~ 1766074 (-)
inpp1 inpp1,si:ch211-160o17.2,LOC107737355,LOC107683640,LOC107730897,LOC107562242 coding downstream 72906 1725270 ~ 1729839 (-)
cnpy2 cnpy2,LOC107572063,LOC107557548 coding downstream 102287 1697584 ~ 1700458 (-)
gdf11 gdf11,LOC107573429,LOC107681455,LOC107683628,LOC107709533,LOC107562248 coding upstream 5659 1828407 ~ 1850291 (-)
LOC122354691 NA coding upstream 39939 1862687 ~ 1862826 (-)
LOC122354701 NA coding upstream 42259 1865007 ~ 1865147 (-)
LOC122354693 NA coding upstream 44522 1867270 ~ 1867409 (-)
LOC122354692 NA coding upstream 46799 1869547 ~ 1869684 (-)
LOC122354127 NA non-coding downstream 61727 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 288842 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 290513 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 291219 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 353740 1444615 ~ 1449005 (-)
G78726 NA non-coding upstream 100957 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 660922 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 664736 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 873661 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 874480 2697228 ~ 2697472 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 86616 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 105958 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 542655 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 827958 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1008609 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 990604 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 996840 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1014535 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 1015493 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 1016099 2838847 ~ 2838919 (-)

Expression


Co-expression Network