opn6a (LOC107740064,LOC107567633,LOC107702020)


Basic Information

Item Value
gene id opn6a
gene name LOC107740064,LOC107567633,LOC107702020
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11539678 ~ 11547713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252522.1
CATTCATGACTCTTTCGACGCTCGGGAAGCCGCTATGTCTGCCCACAGCCCGCTTCAGGTGGCCAACATCCCCTGGAGGAACAACAACTTCAGCCTGATGAGCCGCGACCCGCCGCTGTCCGACCAGGGAGAGACCATCATCGGCGTCTACCTGCTCGTCCTGGGCTGGTTGTcgtggttcgggaacagcatcGTGATCTTCGTTCTGTTCAAGCAGAGATCTTCTCTCCAGCCCACAGACTACCTGACGCTCAACCTGGCCGTCTCTGACGCCAGCATCTCTGTGTTCGGATACTCCCGAGGAATCCTGGAGATCTTCAACATCTTCAGGGACAACGGATACCTCATCACCTCCGTCTGGACCTGCCAGgtggaCGGCTTCTTCACGCTGGTCTTTGGTCTGGGGAGCATCAACACTCTGACCGTCATCAGCATCAGCAGATACATCAAGGGCTGTCACCCTAATAAAGctCACTGCATCACTAACGCCACCGTGCTCAGCTCTGTGATCTTCATCTGGACAGGAGCCGTGTTCTGGTCCGGAGCCCCGATCCTCGGCTGGGGAAGCTACACGGACCGTGGATACGGCACCTGTGAGATCGACTGGGTCAAAGCCAACTACTCCACCATCCACAAATCCTACATCATCTCCATCCTCATCTTCTGCTTCTTCATCCCCGTCCTGATCATGCTCTTCTCGTACATCTCCATCATCAACACGGTGAAGAGAGGGAACGCCATGTCAGCCGAAGGAGACCTGACCGACCGGCAGCGCAAGATCGAGAGAGACGTCACCATCGTGTCTATCGTGATCTGCACAGCGTTCATCCTGGCCTGGTCTCCGTACGCCGTGGTGTCGATGTGGTCAGCCTGGGGTTTCCACGTCCCGAGCCTCACCAGCATCTTCACGCGGCTCTTCGCCAAATCCGCCAGCTTCTACAACCCCCTGATCTACTTCGGCCTGAGCTCCAAGTTCCGGCGGGACGTGAACGTGCTGCTGCCGTGCGGAGGAGAGGCCCGGGACGGCGTCAAGCTCAAGCGCTTCAAGAAGATCAAGGGCAGGGCGGACGGCCAGAGACTCCGAGCCGAGGAGAACCGAGACCTACAGAAGAACCAGAGGAAGTACGCCCCGGCCGACCCCGCCCCCAGCCCCGACTCAGGTGTGGGCAGTCACCTGGAGACTCCGCCCCCTGCGGCTCAGCAGGTGTTCTTCATCGACGCACCTGAACCTGAGTCCCAGTGCGACCGGCTCTAGATCTACACTGCTTTTTTCATTCACtgtgtacaaaataaaagtctttgtttatgTCATATATGACCCCGGAGCAGAGAAGCAGctgtatttataacaataacCAATAATACACTGCATGGCTCAAAATGACCCATTTTTCCTTTATGCCAAAAAATGAAGATACTTAGTCGATTTCCTACCATTAATATatcgattttctcaatatttaccTTTTATGATCATAGTCTGATCATAGCAAACCAGAAATACACAgagatgatttattcatttgatttcaatttaaaactATTGACCCTCATGCTCCAGGGACACATATATGTGTGGGTactgtgtataatttattattattattattattattattaaacatacagCATACAGTAGTG

Function

NR:

description
PREDICTED: opsin-5-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252522.1 True 1641 mRNA 0.52 6 11539678 11547713

Neighbor

gene id symbol gene type direction distance location
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 16020 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 39756 11486516 ~ 11499922 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 54196 11470319 ~ 11485482 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 105154 11424607 ~ 11434524 (+)
afmid afmid coding upstream 115464 11417605 ~ 11424214 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding downstream 50077 11597790 ~ 11599698 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 158395 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 234946 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 247822 11795535 ~ 11811706 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding downstream 322712 11870425 ~ 11883430 (+)
G80809 NA non-coding upstream 27784 11511474 ~ 11511894 (+)
G80808 NA non-coding upstream 30625 11508000 ~ 11509053 (+)
G80804 NA non-coding upstream 67377 11471971 ~ 11472301 (+)
G80668 NA non-coding upstream 87540 11449049 ~ 11452138 (+)
LOC122353945 NA non-coding upstream 92157 11443640 ~ 11447521 (+)
G80814 NA non-coding downstream 1902 11549615 ~ 11555713 (+)
G80819 NA non-coding downstream 9249 11556962 ~ 11559047 (+)
G80825 NA non-coding downstream 23389 11571102 ~ 11571431 (+)
G80860 NA non-coding downstream 135211 11682924 ~ 11683244 (+)
G80861 NA non-coding downstream 135747 11683460 ~ 11683944 (+)
eif4a3 eif4a3,LOC107702040 other upstream 4564 11528719 ~ 11535114 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 12636 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 31907 11505653 ~ 11507771 (+)
G80761 NA other upstream 313056 11222347 ~ 11226622 (+)
G80638 NA other upstream 877708 10641132 ~ 10661970 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 32313 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 150611 11698324 ~ 11700214 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other downstream 204832 11752545 ~ 12870121 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 280165 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 312946 11860659 ~ 11868523 (+)

Expression


Co-expression Network