LOC122354367 (LOC103358720)


Basic Information

Item Value
gene id LOC122354367
gene name LOC103358720
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 16766373 ~ 16769063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252532.1
GTGTATTACGGGAATGTGAGAACGCAATGGAGGCGTGTTTTCTCATTTCCAGGCGTGGCGTGCGGACTTCCGTCTTCCTCCACAGACCTCATATAAAATGACGGCAACATTGCGACCTTATCTGAATGCGGTGCGCGCCACTCTTCAAGCAGCCCTGTGTCTGGAGAACTTCTCCTCTCAGGTGGTCGAGAGACACAACAAGCCTGAGGTGGAAGTTAGGAGCAGCAAAGAGCTTCTTTTGCAGCCTGTGGTCATAAGCCGCAATGAGAAGGAGAAGGTCCTGATTGAAGGGTCCATAAACTCAGTCAGGGTCAGCATCGCTGTCAAACAGGCTGATGAGATTGAGAAGATCCTGTGCCATAAATTTATGAGGTTCATGATGATGCGAGCGGAGAACTTTTTCATCCTGCGGAGGAAACCTGTTGAGGGCTATGACATCAGCTTCCTCATTACCAACTTCCACACAGAACAGATGTACAAACACAAGCTGGTGGACTTTGTTATCCATTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGCTGTCGGTCAACGCTCGGGCCCGAATTGTCGCAGAGGAATTCCTTAAGAATttcTGAGGATCCTTGTCTGCATTCCTAATACCCATCAGAGATCGGTGTTGCTTCGGTTCTTGtggacaaaaacattcaaagtttttaaaaatctccACAGAGCAAAGGGGAAAAAGTCGATTAGTTGTCAAGCATGCAAGAAGATCTACAGGAACAACTGGCCAGTCTTGCAGCACTATATGCAGTCCCCTTTGCCTTCTGTTTAAGGTGCTCCTTGTGCCCATGGATATTAACAATTGTACATTTAGTCAAAAATTTATTACTCTGGTTTTCTGTTgttaggaaaaaaaagaaaaagaaaacacagtcAAGGCAGGTCCTTAAAAGTATTACCTGTAATTAATATAGATGGGCACAGGAATCTTGTTGTTggactgtagtttttttttttgttgtcttttatatacatgtactcacatgctttcatttttgttacaatggaaaaaaaaatcaggaattgattaaatgttaaagatatgagataaaaaaaaaacattgggtGTTTATATTTTGGCACTGCTAAACTCCAATATTAtaactatacaaaaaaaatgtgtaaaacatcATGacaataaattcaataaaatatattgtgctTTCTGTA

Function

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 4-like

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252532.1 True 1202 mRNA 0.41 6 16766373 16769063

Neighbor

gene id symbol gene type direction distance location
LOC122354689 kcnmb2,LOC107600278,LOC107656067,LOC107699784 coding downstream 105758 16655132 ~ 16660615 (-)
LOC122354663 LOC107753811,LOC107656084,LOC107593146 coding downstream 210698 16554408 ~ 16555675 (-)
tbl1xr1a tbl1xr1,LOC107600277,LOC107718892,LOC106584305,LOC107557783 coding downstream 293406 16431654 ~ 16472967 (-)
LOC122353772 spata16,LOC107593153 coding downstream 816783 15842161 ~ 15949590 (-)
b3gnt5a b3gnt5a,LOC107593139,LOC107656073,LOC107753797,LOC107674530,LOC107718888,LOC107563744 coding downstream 984684 15776187 ~ 15781689 (-)
LOC122353589 LOC103358720 coding upstream 120527 16889590 ~ 16891932 (-)
lrig1 lrig1,LOC107753782,LOC107716980,LOC107557776,LOC107600281 coding upstream 189840 16958903 ~ 16992270 (-)
suclg2 suclg2,LOC107753779,LOC107729402,LOC107699794,LOC107656059 coding upstream 327258 17096321 ~ 17184119 (-)
LOC122353607 kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395,LOC107656060,LOC107699793 coding upstream 680204 17449267 ~ 17454774 (-)
LOC122353782 LOC107727791,LOC107581429,LOC107691380 coding upstream 809262 17578325 ~ 17590223 (-)
G82447 NA non-coding downstream 117819 16610565 ~ 16648554 (-)
G82445 NA non-coding downstream 156665 16606799 ~ 16609708 (-)
G82437 NA non-coding downstream 177613 16588394 ~ 16588760 (-)
LOC122354516 NA non-coding downstream 262939 16499216 ~ 16503434 (-)
G82389 NA non-coding downstream 321142 16427798 ~ 16445231 (-)
G82496 NA non-coding upstream 229598 16998661 ~ 16998866 (-)
G82578 NA non-coding upstream 678096 17447159 ~ 17447681 (-)
LOC122353733 NA non-coding upstream 696095 17465158 ~ 17476011 (-)
G82582 NA non-coding upstream 765785 17534848 ~ 17546075 (-)
G82577 NA non-coding upstream 793078 17562141 ~ 17563010 (-)
LOC122353776 NA other downstream 159793 16604004 ~ 16606580 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other downstream 172443 16590806 ~ 16593930 (-)
LOC122354045 NA other downstream 1151436 15595565 ~ 15614937 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other downstream 1189308 15552356 ~ 15577065 (-)
LOC122354564 NA other downstream 1364682 15400918 ~ 15401691 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other upstream 9849 16778912 ~ 16912574 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other upstream 768440 17537503 ~ 17540171 (-)
G82588 phf2,LOC107556181,LOC107685641 other upstream 781518 17550581 ~ 17559836 (-)
G82590 fam120a,LOC107581418,LOC107685640,LOC107691381,LOC107749502,LOC107556189 other upstream 804539 17573602 ~ 17576984 (-)
LOC122354622 NA other upstream 865743 17634806 ~ 17640897 (-)

Expression


Co-expression Network