tp53rk (tp53rk,LOC107557544,LOC107730899,LOC107696036,LOC107572066,LOC107683647)


Basic Information

Item Value
gene id tp53rk
gene name tp53rk,LOC107557544,LOC107730899,LOC107696036,LOC107572066,LOC107683647
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1662085 ~ 1664340 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252585.1
AAGACACGTGGAGCTTTTTCCCCGGAAGCAGAGAGCACGTGGCCGTATGTCACGGTTAGTAACATGGCCCACTCAGACTCGGTAAAAGCGAGTGTCCCGGCGTTTTTAAAGGAGGCGCAGTTGATTAAACAGGGCGCGGAAGCTCGCGTCTACCGGAGCACGTTTTTGGGTCGGTCGGTGGTTATTAAAGAGAGGTTCCCAAAATTGTATCGCCACCCTGAAGTCGATGAGAAACTGACGCGCCGCAGAACCACACAGGAAGTGCGATCCATACTGCGCTGCAGGAGAGCAGGTATCAACGCGcctgttgtttattttgttgactACACCACTCACTGCATTTTCTTGGAGGACATCCTTCACTCGGTGTCAGTAAGAGATCACATCGTATCAGCCCGAGCGTCCGGAACCGACCCGAAGCGTCTCCAGACTCTAGCAGACGAGATCGGAAGTATCCTGGCTCAGATGCACGACGAAGACGTCATCCACGGGGATCTCACCACCTCCAACATGCTGCTGGTCAGTGGAGCCGAAGACCCGAACGTCAAGCTGGTTCTCATCGACTTTGGGTTGAGTTATATTTCTGCTCTCCCGGAAGATAAAGGGGTCGACCTGTACGTGTTGGAGAAAGCTTTTCTCAGCACTCATCCCAAAACAGAGACTTTGTTTGAGAGGCTTCTGAAAAGTTACTCCGCCTCGTCCAAAAAGTCCTCTGCGGTCATCAAGAAGCTGGATGAAGTTCGGTTGAGAGGACGGAAGAGGTCTATGGTCGGATAAAGTGTCTTCTGGCATTGAATCGGTTTCACACAGGACTGTTGGAAATGTAGTTTTCTTTTAGTACGTGAATGTGTAGGGGTTTTTGTGAGACTGAACATAATGTGGTTTTTCTCCAGTTCAGCGTGGATAATGGACAAATGCAGACCCTCGAACTGACACCAGCTCGTGTCTGGCCCACCTGATcgatatttaataaatgttggtCAGAGTAACTActtaaaataatcacaataacacaaaatGGCAATTTAGTTGGAGTCCTAGTAAAAATACATGTGCTGGTGTGCCTCTGAGACCttcaaataaaaccaataaaaactgcattcagTCAGTAATATACGTTCTGGATAGTCATGACTGGTGGTCAAGTCAATTGATCATTGTGTATGTGCAGCGGTGCTTTATAACGGATCGTATGAGGAATagtgaaaagaaatgaagaagaaACCCAAGTTCTTTCTTGCAGCCTCAAAGAAAATGACATCGAGAAACATCATACCAGTATTAGGTGAGAAGGATGAGTTATGCTCTGATGAGTTAAAAAACCAATGACAATGAATCATCacttattttcaatttaattgatttccaaaaaagcattataaacatactaatgttcatttatttgctgtAGATACAATACAAGAGTTCCCCTGGctgtacaaaaatatttcatatttaaccAAAATATGTTTGCGTTACTGCTCattgtgtaataaatgtttttttttgtcacta

Function

symbol description
tp53rk Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and tRNA threonylcarbamoyladenosine metabolic process. Predicted to act upstream of or within phosphorylation and tRNA processing. Predicted to be part of EKC/KEOPS complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 4. Orthologous to human TP53RK (TP53 regulating kinase).

NR:

description
PREDICTED: TP53-regulating kinase

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08851 TP53RK, PRPK, BUD32; TP53 regulating kinase and related kinases

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252585.1 True 1515 mRNA 0.44 2 1662085 1664340

Neighbor

gene id symbol gene type direction distance location
csnk2a4 LOC107730901,LOC107683644,LOC107572060,LOC107696034,LOC104930306,LOC108424612,LOC103042686 coding upstream 4941 1650490 ~ 1657144 (+)
ube2v1 ube2v1,LOC107572061,LOC107683645,LOC105022328,LOC106572481,LOC103044311,LOC108425074 coding upstream 11745 1644898 ~ 1650340 (+)
pip4k2cb pip4k2cb,LOC107730889,LOC107557542 coding upstream 18849 1635887 ~ 1643236 (+)
igfbp6a LOC107718979,LOC107687374,LOC107696018,LOC107730876,LOC107557535 coding upstream 28381 1631827 ~ 1633704 (+)
lima1b LOC107707364,LOC107687370,LOC107754562,LOC107551335 coding upstream 43559 1601707 ~ 1618526 (+)
zgc:113184 LOC107683652,LOC107737353,LOC107572062,LOC107557547,LOC107730888,LOC107696038 coding downstream 36343 1700683 ~ 1703661 (+)
dnajc14 LOC107683641,LOC107737354,LOC107730896,LOC107696039,LOC107557550 coding downstream 52974 1717314 ~ 1723715 (+)
mcrs1 mcrs1,LOC107683638,LOC107696040,LOC107730878 coding downstream 67461 1731801 ~ 1738760 (+)
suox suox,LOC107683635,LOC107737358,LOC107562243,LOC107696022 coding downstream 74703 1739043 ~ 1745824 (+)
LOC122354125 Tuba1a,tuba1a,LOC108255233,LOC107683637,LOC108247626,LOC106934846,LOC102789989 coding downstream 85414 1749754 ~ 1752168 (+)
G78490 NA non-coding upstream 86960 1572594 ~ 1575125 (+)
G78484 NA non-coding upstream 99429 1558860 ~ 1562656 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding upstream 132928 1524347 ~ 1529157 (+)
G78471 LOC107551319 non-coding upstream 138007 1521976 ~ 1524078 (+)
G78479 NA non-coding upstream 147907 1513879 ~ 1514178 (+)
G78517 NA non-coding downstream 4682 1669022 ~ 1669695 (+)
G78540 NA non-coding downstream 102031 1766371 ~ 1766589 (+)
G78625 NA non-coding downstream 137011 1801351 ~ 1802313 (+)
G78652 LOC107550538,LOC107697642 non-coding downstream 234393 1898733 ~ 1899063 (+)
G78674 NA non-coding downstream 272520 1936860 ~ 1939086 (+)
G78500 NA other upstream 68960 1590744 ~ 1593125 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other upstream 144122 1485707 ~ 1517963 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 213125 1419520 ~ 1448960 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 470364 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 584686 1074707 ~ 1077399 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 13886 1678226 ~ 1681200 (+)
G78763 NA other downstream 1013795 2678135 ~ 2680142 (+)
G78790 NA other downstream 1161199 2825539 ~ 2826794 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other downstream 1605859 3270199 ~ 3272619 (+)
LOC122353713 LOC107714487,LOC107555999 other downstream 1693870 3358210 ~ 3361658 (+)

Expression


Co-expression Network