r3hdm4 (r3hdm4,LOC107750993,LOC107752158,LOC107550537,LOC107697641,LOC107661084,LOC107592851)


Basic Information

Item Value
gene id r3hdm4
gene name r3hdm4,LOC107750993,LOC107752158,LOC107550537,LOC107697641,LOC107661084,LOC107592851
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1883645 ~ 1889186 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252730.1
CCTAGCATTAGCCATTAGCCATCGCGGCTGAAAGCTGATCAGGACCTTTTCTCCTTCaaaatttctttgtttttgtcaccGTCGCGTTTTTGTGAGAAGGCTGTGAGATGGTTTTGTTAAAAAGCAATAACAATGAGGAACAGGAGTTAATCCTAAACGAGCCATGCTGCTCATCTCTACCCAGCTCTCCTGCAAAACGTGTTTCTCCAGCCAAAAAGAAGCAGTTTTTTATAAACCAGGCCATTCGTAACTCTGACCTCACTCCAAGAGCCAAGGGCAAGAAGAGTCTGAGACGACAGGAAAACACTCGTTTTCTGGACAATCTTTTGGAACGGGACGAGTGCTCTAAAGAGGACGTTGAAGGACACGAAACAGCCTTGCCCACCATCTTCACTGAAGCCTGCACCAATGGAAACTATGTGGAGTACTGGAGTGATTTTATGAATCGTTCTGGGGAGGAGCAAGAGCGACTATTGGCTCTGCTGGAGGAGGAGGCCCAGAGGAGCCGCTCCGACAAGAACCATAAAGACCAAAGAGAAGTAAATCCTGCCTTCAGTGCTCAGGAATGCTTTCAGAGAATTGATCGGCGGCTCCGTGCGACGCTGAGACGCAGACAGATCCCCATGGGAGTGTTGGAGGGTCTGGAGTCTGATCTGCTGGGATTCTTCGTGGCACATCCACACTCAATTTACATAACCAAACTCAGCAACAGCTATGAGCGACTGCTGCTTCATGCTATCTGCCAGTACATGGATCTCACCTCTGCTAGCTCTGACTGTAATGGTGCTCGACAGACTGAGGTGGTCAACAAACAGGAAGCGTTCCTCCCTCCACAGCCTCTGCTCTCCGCCTACCTGGAGCAGTTGAGCTGAACCGCTGTAAACCAGTACCACTGATGCTCATCCAGCCACAACCGGCACCACTGCCCTTGAAAAATAATGCTTGACCTTGGCCTGGCCAGTATAAACTGTGTACATGACAATATGTCATTGGACCTGGCCTGCAGCCCTTGGCCTTTAGGAGAGATTGTGCTAACTAGATTATCGTACTCGGTGTCACTATCACTTtgattcagtttttaaatgcagtttggaTGTATTAGTAGATGTTACTGTTACTACAGCTGTCTTTataaatgattctttttttttccatgttgcAGACAGAATGTTACGTTTACTGTCACGGCATCCTTGTATAATAATAGAAGCGTAATTGTATGACTTCAAGAAGAGGCAGAAAGTTATTGTTTTTGATGTTCATCTTCACTTGAAAATGAATTGAAGCGGTTTTAGGAATTCACGTCCATCTCTGATGTTTGCAAAGGCCGCATAGAGTCGCTTTCAAAAACTCAGGCTCCTACAAAAGGATAACACCGTATAAATCAGCACATGCTTCACCAATAATATGACGGTTATGTAGTTATTGTACATTCATACCTGTGTGCACAACTTTTTACAATTCACATACATTTGATTTGTGAAGACTGCTAATTTACTTCAGCCAATCCTGCCTGACAACTGAAGAGTGTTAAGTAGACCTTTTATAAGCAACACTCTAACTTGAATTTAAGTAGAAAGCAGTGTCTTGTTTGTTAATCTGTCATAATTAGGTCTCAcgtcatttttttccattaaggATCTGCCAACATGCACTTGCTACTATGCCTTACACGTATACGCCATATTTGTCAgtttagcatttttgtatttatatcttGAGCCTTTACATCAAGGTTATATATGGTTTACaaaatcttttaatgttttgtacCATCAAGAGTCCTGAGACACTTGAGCATTTATTGCATTGGTGTTTATAAccaaagtgtgtgtatgtgctgatTCTCAGGCATCATCTGTTGTGAATGTGGACTTTAAACAATTTCATTACTCATAAAATCACCTGAAAACCAGGTTTGTTTAAATCTTTCGAgagtgtttttgaaatatttataattgtgttaaaatatttgagTTAAATGCTATTTATACCATTATGGCAGAATATGAATGCATACAATAGAGCGCTTAATTGTGTTTAGTTTTGGTCTGTGGTGAGTATCTGTATTTAAGACAATTAAAATACCAAATTTTTAA

Function

symbol description
r3hdm4 Predicted to enable nucleic acid binding activity. Orthologous to human R3HDM4 (R3H domain containing 4).

NR:

description
R3H domain-containing protein 4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252730.1 True 2099 mRNA 0.41 8 1883645 1889186

Neighbor

gene id symbol gene type direction distance location
LOC122354708 NA coding downstream 6230 1877275 ~ 1877415 (-)
LOC122354706 NA coding downstream 8856 1874649 ~ 1874789 (-)
LOC122354709 NA coding downstream 11340 1872166 ~ 1872305 (-)
LOC122354692 NA coding downstream 13961 1869547 ~ 1869684 (-)
LOC122354693 NA coding downstream 16236 1867270 ~ 1867409 (-)
abca7 LOC107550538,LOC107697642 coding upstream 493 1889679 ~ 1913851 (-)
si:ch73-40i7.5 LOC107592849,LOC107750992,LOC107752160,LOC107697644,LOC107550530 coding upstream 24975 1914161 ~ 1920741 (-)
pex11g pex11g coding upstream 31645 1920831 ~ 1923591 (-)
si:ch73-40i7.2 LOC107751000,LOC107592879,LOC107699362,LOC107752169 coding upstream 37083 1926269 ~ 1936304 (-)
slc35e1 slc35e1,LOC107750991,LOC107699363,LOC107592850,LOC107752163,LOC107654177,LOC107550533 coding upstream 48183 1937369 ~ 1942381 (-)
LOC122354127 NA non-coding downstream 142627 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 369742 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 371413 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 372119 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 434640 1444615 ~ 1449005 (-)
G78726 NA non-coding upstream 34519 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 594484 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 598298 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 807223 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 808042 2697228 ~ 2697472 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 167516 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 186858 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 623555 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 908858 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1089509 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 924166 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 930402 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 948097 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 949055 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 949661 2838847 ~ 2838919 (-)

Expression


Co-expression Network