LOC122354543 (agtrap,LOC107745345,LOC107669010,LOC107742911,LOC107557898,LOC107658604,LOC107560425,LOC107560418)


Basic Information

Item Value
gene id LOC122354543
gene name agtrap,LOC107745345,LOC107669010,LOC107742911,LOC107557898,LOC107658604,LOC107560425,LOC107560418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 4405965 ~ 4412090 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252775.1
ATCAGGCTGGTGTCACATGGTTTATGTTTGCGGTCACTTCAGAAACCTCTGTTGCACACAGTTACGATGAAAGTGTTTCAGGCTTCATTTGTAAAATACTGAAAACTACAGAGGGACGCTAAATCATAAAGGGGCAGTGATACTATGGAAATACCAGCCATAAATCTCAAGgcCATCGTGTTGGTTCACTGGTTACTGACAGTCTGGGCATGTTTTATCAGCTGGCTTCCTACTTCCTATGTGTTGGGTAACATGAGTGTACTTGCAGTGGGAGTGTGGGCCATTGCACAAAGAGACTCCATAGACGCTGTATTAATGTTCTTGATTGGGTTGGCAGTTACCATCCTGACTGACATTGTACACTTTGGGCTGTACTATGCAGTGGGTGAAATCCAATATAAAAACCTGCCACTATTCCACTTTAGTGGGGGAATGGCCATTATGAGCCTGTTGCTCAAACCTGTTTCCTGCTTCTTTGTCTACCAGATGTACCGTGAGCGGGGTGGTGAATACAACGTCAACTTTGGTTTTCCAAGGATAACTCGAAACAGAGATGCCTACCAGTCCATTGACCACCAGGAACAGTCTGGCATCTCTGCCAGCACCTACAACCAAGCTGAGGCTGGCAAACCTGGGCCACCTTCCTACTGAACAAAGAGAAACTTTCTTTGCTGCCAAGGCCATAATGAATTACAAAATTTTTGTTTgggttatgttttatatatatataaaacacaaaaaagctttgaccaaactatttaaaaagctttacatttgtttgttttttgaggtTTGTAAAGCTCATAATGTGCAGTTTCATCTTAGTTCTTCTGAAGCTGTATTTTGGGGTGTTTGGCAGCTCTCCAAGTGCCCATCTGTTACTATTGGTCAATTATTACTTCTTTTCCGAGATTGTAATACTATagttttctacatttatttgcttcatttattatttgattcattcattttggtCTGCAGTGGgactacaacatttttttctgttaatactTAGAGGATTTGAAAGATTCTTTTAAAGCACATGACATGcaatctgttttatatttatatagtacaATTCAATAGATTGGTCATGCACtagattatttatttggtaagttTGGTAATGTTAAAACAGTGGATTTACTAATTTTgagaaattcaaatatttggtATAGTATTTGATATAAGAATGTATTTAGATACAAACAGTTATGTAAATGAGTGTTAAGCACTCATTAAGCACATGTTAAGCAATGTTAACTTGTAAAGACTGTATtgacttttaaaacaaatgctgatATCAGTGTACCAGTATTAATTGATTtgtaacaaaattaatttatctGTTATGTTCCATATTATTCTTACTGTGCTTTACATTAAAGATTATATCAGAGAAAAGACAATTCTGCCATTAGTTAATCAAGTATTGTTGTATCAGTGAATGGAGAACATCAGTTTTGCATTCCATGTTCAAAGTCatataaaattactttaacaagcatttaaattttgggtgagctattccttaaCACTACTTTGAGGGTTATTTTAACAGCTTCAGAAGACAATTTTGAAATCAAgtatttctctgtctttctttacaTCTGTTCAGTGCTATTACTGTCCCTTGCATGTCAGTTTGGCTCAATCTGTTGGGTCAAACATCTTGAACACATTAAAGTTACATCAGATTGACCACA

Function

symbol description
agtrap Predicted to be involved in regulation of blood pressure. Predicted to act upstream of or within angiotensin-activated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in notochord. Orthologous to human AGTRAP (angiotensin II receptor associated protein).

NR:

description
PREDICTED: type-1 angiotensin II receptor-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252775.1 True 1706 mRNA 0.36 5 4405965 4412090

Neighbor

gene id symbol gene type direction distance location
ctbs ctbs,LOC107742908 coding downstream 1792 4400828 ~ 4404173 (-)
uox uox,uric,LOC107669002,LOC107560424,LOC107658581,LOC107742901,LOC108430123,LOC103030682 coding downstream 22012 4381167 ~ 4383953 (-)
ttll7 ttll7,LOC107745334,LOC107669020 coding downstream 38800 4292348 ~ 4367165 (-)
adgrl4 adgrl4,LOC107556188,LOC107745336,LOC107710447,LOC107592582 coding downstream 403320 3985490 ~ 4002645 (-)
vtg3 vtg3,LOC107745337,LOC107556190,LOC107669019,LOC107710446 coding downstream 422785 3972756 ~ 3983180 (-)
draxina LOC107560421,LOC107745332,LOC107669000,LOC107557905 coding upstream 6830 4418920 ~ 4436036 (-)
pank4 pank4,LOC107742899,LOC107557906,LOC107745330 coding upstream 24784 4436874 ~ 4454436 (-)
ghrh LOC107718698,LOC107557909,LOC107745328,LOC107658696,LOC107560430,LOC107669017 coding upstream 72045 4484135 ~ 4487197 (-)
LOC122354090 LOC107658671,LOC107718693,LOC107557899 coding upstream 85470 4497560 ~ 4509180 (-)
LOC122353703 LOC107712987,LOC107746004,LOC107701987,LOC107592853,LOC107735212,LOC107706548,LOC107557400 coding upstream 798692 5210782 ~ 5212158 (-)
G79236 NA non-coding downstream 5375 4399506 ~ 4400590 (-)
G79227 NA non-coding downstream 17226 4388101 ~ 4388739 (-)
G79172 NA non-coding downstream 30572 4374648 ~ 4375393 (-)
G79126 NA non-coding downstream 293895 4109104 ~ 4112070 (-)
G79083 nwd1,LOC107710443,LOC107658741,LOC107592553,LOC107655543,LOC107730478 non-coding downstream 625648 3779999 ~ 3780317 (-)
G79256 NA non-coding upstream 52697 4464787 ~ 4469281 (-)
LOC122353716 NA non-coding upstream 749939 5162029 ~ 5164464 (-)
G79327 LOC107393734 non-coding upstream 759685 5171775 ~ 5172519 (-)
G79329 LOC107660256,LOC107566921 non-coding upstream 769206 5181296 ~ 5181698 (-)
LOC122354468 NA non-coding upstream 781922 5194012 ~ 5195326 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other downstream 440174 3961981 ~ 3965791 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other downstream 491330 3913248 ~ 3914635 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other downstream 571042 3813505 ~ 3834923 (-)
G79003 NA other downstream 864910 3540001 ~ 3541055 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 1149753 3253863 ~ 3256212 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 1326926 5739016 ~ 5765140 (-)
G79565 NA other upstream 1684043 6096133 ~ 6096480 (-)
vamp3 vamp3 other upstream 2401535 6813625 ~ 6847790 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other upstream 2719488 7131578 ~ 7141236 (-)
LOC122354641 svbp other upstream 2741375 7153465 ~ 7155275 (-)

Expression


Co-expression Network