jupa (jupa,LOC107562072,LOC107753847,LOC107680531,LOC108438667,LOC106564751)


Basic Information

Item Value
gene id jupa
gene name jupa,LOC107562072,LOC107753847,LOC107680531,LOC108438667,LOC106564751
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15349738 ~ 15371682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252792.1
AGACTTTGCCCTCTCTCCCCAGCGCACATTGTTCACCCTCATCTGAATGCGAGAGAAAGTGTCGCTCTCTCTGGAAGTCTGCGCGCTGGGGAAAACTAAAAGACTCTCGGATCGCTGTCAGCAGCAGTGTTTGGAGGCGCGCGTTTAAAGgttTTACTTTTGGACTGTTTGGTTTGAGTCCAGGAGGCCAAAATGGAAATGCACAtGGCAGAGGCCCCAGGCTCGGTGAAGGTCACAGAGTGGCAGCAGTCGTATTACGGCACAGATTCAGGCATCCAGTCAGGAGCCACTACGGTTCGCTCAGATGAAGATGGAACGGAGTACAGCACCAAGAAATTCACCTACACCACCACATTCACAGAGAACCCTGCAGACGTGGAGTCTCAATATAATATGACTCGGGCCCAGCGCATAAGAGCAGCCATGTTTCCTGAGACGGTGATGGAGGGAACGGCCGTCCTTTCCACACAGATGGATCCGTCCCAGCAGACCAATGTCCAGAAGCTGGCCGAACCGTCTCAGCAGCTCAAAGCCGCCATCATTCATCTTATCAACTACCAGGACGATGCCGAACTCGCCACCCGCGCCATTCCGGAGCTCACCAAACTCCTCAACGATGAGGACCAGGTCGTGGTGAATAAGGCGGCAATGATCGTGAACCAGCTGACCCGCAAGGAGGCGTCTCGCCGGGCTCTGATGCAGTCCCCGCAGATGGTGGCCGCTGTAGTGAGAGCCATGCAGAACACGTCTGACATGGAGACGACCCGCGCCACAGCCAGCATCCTGCACAACCTCTCCCATCAGCGCGAGGGGCTGCTCGCCATCTTCAAATCAGGAGGCATTCCCGCTCTGGTGCGCATGCTGAGCTCTCCGATGGATTCGGTTCTTTTCTATGCCATCACCACCCTGCACAATCTGCTTCTGCATCAGGAGGGAGCCAAGATGGCGGTGCGTCTGGCTGACGGCCTGCAGAGGATGGTTCCCCTGCTGAAGAAAAGCAACCCCAAGTTTCTGGCCATCACCACAGACTGCCTACAGCTGCTTTCTTACGGCAACCAGGAGAGCAAGCTTATCATCCTGGCTAACGGAGGCCCTGAGGGTTTGGTGAACATCATGAGGACCTACAACTATGAGAAGCTGCTCTGGACCACTAGTCGCGTGCTCAAAGTACTCTCAGTCTGTCCTAGTAACAAACCCGCTATTGTAGATGCTGgtggAATGCAAGCTCTTGGTAAGCATCTGACCGGCTCCAGTCAACGTCTGATGCAAAACTGCCTGTGGACCTTGAGAAATTTGTCAGACGCTGCAACCAAACAGGACGGAATGGAAAATCTGCTCCAAGTGCTGGTCGGCCTGCTGTCCTCCGAAGACATCAACATGTTAACCTGCTCCACAGGCATCCTGTCCAACCTCACCTGCAACAACACACGCAACAAGACACAGGTGACCCAGAGCAACGGCGTGGAGGCCCTGATTCACACCATCGTGAGGGCCGGTTCAAAACAAGACGTGATCGAGCCAGCTGTCTGCGCCCTGCGTCACCTGACCAGCCGGCACCCGGACGCCGAGACCGCACAGAATGCCGTACGAATGCATTACGGGATCCCGGCTATTGTCAAATTGCTCAATCAGCCCTTCTACTGGCCAGTTGTTAAGGCTGTGGTTGGTCTGATTCGTAACCTGGCGCTGTGTCCAGCCAATCAGGCTCCTTTGAGAGATGCCGAAGCTATTCCCAAACTGGTCACTTTGCTTACGAAGGCTCATCAAGATGCACAGAAACACGGTTCCTCTGCTCAACAAACATACCAGGATGGAGTGAGAATGGAGGAGATCGTGGAGGGCTGTACTGGTGCTCTTCATATCATGGCCAGAGATCCTATTAACAAAGCCACCATCGCCAGCATGGACACCATTCCTCTGTTTGTTCAGCTGTTGTATTCTCCTCTGGATAACGTCAAGCGTGTGGCAGCTGGTGTTCTGTGCGAACTGGCTCTCGACAAGCAGTCGGCTGAGATCATTGATTCGGAAGGAGCCTGTGCTCCTCTCATGGAGCTCCTCCACTCCAACAACGAAGGGATCGCCACCTATGCCGCTGCCGTTCTCTTCCGAATCTCTGAGGACAAAAACCCAGACTATAAGAAACGAGTGTCAGTGGAGCTCACGCACTCGCTCTTCAAACACGACCCCGCTGCTTGGGAGCTGGCACACAACACCATAATAGAACCTGGCCTTCCAGAGGATGATCTCGATGGCTACGGCCCTGCGGCATATCAAGGGTACAGTGATGGCATGCATATGGAGAGTATGCAGCTAGATCCAGAAATGCCAGAGGATTTTGTGTCAGGCATGGGTTACAACTCCATGGCCAGACCCTACCATGATTACTAACAGcccGATGATGCCACTGATAGAGGAATAGGAAAAATAGAAGAGACAGACAGTCCTGgcagagttgtttttttttcatggctgGACGCCTGTGGTCCATTTCtcagcaaacacacactgacactgcTGTAATATATGCAATTCTCACTGTGCTGGGAGAGACAGAATCGAGCACAACTTTAACCTGCCTTTATAAAAGGATGACAGCATGATGCAATTTACACGTCTTTTTgtagaaaatgttatattttagtgtttcttatGGGTGCATTAATACATTGTTGGTAAGAGGACTGGTTAACTATGCCAAAgagattttattataatattttataatgataatcacgttgctttttatagttttaagaTTTTGGAAAATGCAATCAATGATTTAGACTTGTGCTCTCACAATAACTGACCTGAGGTCAGCTTTATAGCTTCGTTCACGGTGGTTTTAGACAGGTGATCAGAGCTGATTGGCTTTTGTGAGCGGAAATGTCTGGCATGTTGATTTTCTACAGCGCTTAGGACTCAATACAGTGCATCTCTGTGTTTCCTCCCTTGCTGAGACTGTCAAATAATGGAGTTTTTTTACGTTAACTTTTTcccacttgttttttttttcactccatatatttgtttttgctaaaAGTGTCTTAATGTATAGACAAGGAAATactgattttgtttgttttgcattgcaatgtttatggagattttttttttttatttgcgtgATAAATGCTGTGCTGATTGAAAGGGACTAATGTTTAACCAAACAATTAAACTTTGAGAGTTAAACTAGCTTCTCATTTACTAACTCCTCTTAGGAGGCAAACAGAACAGACAAAGGGATTCTTTGTAGCGTTTTTACTTCACactttgtccaaaaaaaaacaaaataaaatcatgttaacTAATA

Function

symbol description
jupa Predicted to enable several functions, including alpha-catenin binding activity; cadherin binding activity; and transcription coactivator activity. Acts upstream of or within atrioventricular valve morphogenesis and negative regulation of Wnt signaling pathway involved in heart development. Located in adherens junction; desmosome; and nucleus. Part of catenin complex. Is expressed in several structures, including EVL; ectoderm; forerunner cell group; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in cardiomyopathy (multiple); palmoplantar keratosis (multiple); renal cell carcinoma; and reproductive organ cancer (multiple). Orthologous to human JUP (junction plakoglobin).

NR:

description
PREDICTED: junction plakoglobin-like

GO:

id name namespace
GO:0043588 skin development biological_process
GO:0003136 negative regulation of heart induction by canonical Wnt signaling pathway biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0003181 atrioventricular valve morphogenesis biological_process
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0048599 oocyte development biological_process
GO:0007369 gastrulation biological_process
GO:0007398 ectoderm development biological_process
GO:0007399 nervous system development biological_process
GO:0003308 negative regulation of Wnt signaling pathway involved in heart development biological_process
GO:0016331 morphogenesis of embryonic epithelium biological_process
GO:0005829 cytosol cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005915 zonula adherens cellular_component
GO:0005916 fascia adherens cellular_component
GO:0005634 nucleus cellular_component
GO:0030018 Z disc cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0030057 desmosome cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016342 catenin complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0045294 alpha-catenin binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
K10056 JUP; junction plakoglobin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252792.1 True 3310 mRNA 0.49 16 15349738 15371682

Neighbor

gene id symbol gene type direction distance location
gpr179 LOC107753843,LOC107718864,LOC107680456,LOC107562070,LOC107563489,LOC106564745 coding downstream 66894 15267975 ~ 15282844 (-)
LOC122353770 NA coding downstream 104038 15242488 ~ 15245700 (-)
LOC122353768 NA coding downstream 135493 15209438 ~ 15214245 (-)
LOC122353767 NA coding downstream 144004 15204939 ~ 15205734 (-)
LOC122353766 NA coding downstream 149098 15197802 ~ 15200640 (-)
krt98 LOC107562078,LOC107680525,LOC107753857,LOC107563686,LOC107718877,LOC107674549 coding upstream 51470 15423152 ~ 15430070 (-)
hyls1 si:dkey-23f9.4,LOC107680541,LOC107597141,LOC107674570,LOC107563627,LOC107718881,LOC107753882 coding upstream 96288 15467970 ~ 15474238 (-)
ptp4a1 ptp4a1,LOC107563655,LOC107597142 coding upstream 117938 15489620 ~ 15493617 (-)
myom2a LOC107674554,LOC107680534,LOC107597144,LOC107753884,LOC107718897 coding upstream 127432 15499114 ~ 15521716 (-)
ly75 LOC107680532,LOC107674542,LOC107563496,LOC107597186,LOC107753885,LOC107718898 coding upstream 151661 15523343 ~ 15550688 (-)
G82190 LOC107562076,LOC107753881,LOC107680504,LOC107718872,LOC107674524,LOC107563570 non-coding downstream 7320 15337927 ~ 15342418 (-)
G82189 NA non-coding downstream 13915 15335006 ~ 15335823 (-)
G82187 NA non-coding downstream 17669 15331657 ~ 15332069 (-)
LOC122354567 abcc10,LOC107680503,LOC107753844,LOC107718869,LOC107674523 non-coding downstream 29607 15317492 ~ 15320131 (-)
G82181 NA non-coding downstream 35258 15313945 ~ 15314480 (-)
G82160 krt94,LOC107753855,LOC107680518,LOC107562075,LOC107674540,LOC107718880,LOC107563560 non-coding upstream 49123 15420805 ~ 15446837 (-)
G82211 NA non-coding upstream 72840 15444522 ~ 15450399 (-)
G82216 NA non-coding upstream 99624 15471306 ~ 15471689 (-)
G82214 NA non-coding upstream 125968 15497650 ~ 15498104 (-)
G82260 NA non-coding upstream 241464 15613146 ~ 15613851 (-)
LOC122354561 NA other downstream 114302 15233933 ~ 15235436 (-)
G82067 NA other downstream 135680 15204961 ~ 15214058 (-)
G81866 NA other downstream 813346 14534718 ~ 14536392 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other downstream 897998 14442601 ~ 14451740 (-)
G81829 NA other downstream 1044614 13885683 ~ 14305124 (-)
LOC122354564 NA other upstream 29236 15400918 ~ 15401691 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other upstream 180674 15552356 ~ 15577065 (-)
LOC122354045 NA other upstream 223883 15595565 ~ 15614937 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other upstream 1219124 16590806 ~ 16593930 (-)
LOC122353776 NA other upstream 1232322 16604004 ~ 16606580 (-)

Expression


Co-expression Network