LOC122354622


Basic Information

Item Value
gene id LOC122354622
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 17634806 ~ 17640897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252879.1
TCTGCTTGATCATCTGGGAGGGGAGGCCAGAATGGAGATAAAACTCCAATCTTCAGCTATCAGGGAAAATCCAGAAgctgtttttgaagtgttaaaagatTTGTATGGGGGGAGACGGACATTTGTGCAATTACAACAGAGGTTTTATGAgcgaaaacaaaaagaaggcGAATCACTTACCGAATTTTCTCATGCTCTTATGTCATTGATGGATGCAATTCTTAACGGGAACCCAGGCAGCGTTCCGAATTCTGACAAAGTGCTTCGCGATCAGTTtgttgaatatgttcaagatgTAATGCTGAAGCGTGAGTTAAAAAGATTTGTGAGGGAGAAACCATCTTCTACATTGCTGGAGGTTCGACGTGAAGCTCTTAGGTGGGTGGAAGAGGGAAATAAGGAAACAACTGCCTTATATTCTCAGTCATGGTGTAACGCTACTCATGGTAGGGTTATTGATATGGAGCCTAAGGTTAGGTTCCAGGATTCTACAGACTTAAAGGAGGTTAAGGAGATGTTAAAACAACAGCAAGTACAAATAAATGACCTTACCCAGCGTTTTGATAGTTTTATGTCTCAGAGGAATGATCCACCTGTTGTTCCTTCAACTAGGCAGAATTCTTCACGTCGATGCCTTCGCTGTAATAGAGTTGGGCATATTGCCAGATACTGTCGGTCATCCTGGCCTGTTGAGTCAAATGCTAGGTCACCTCAGGCAaatgtcaatgagacttctgttGGGGAACCTGATAGTGTAGCCCCTCCTGCAATCTTGAGTCAGATCGCAGAGGAAGCTAGTGAAGCCGCACAAACTCCTGTGTGCCCTACTATTTTGCAGCGTCTTGTGGGCAAATGCCCTATTGTGACTGCGGTAATGGGGGGGGTTGAGATCTCATGTTTACTGGACACTGGGTCAATGGTAACTACTGTAACAGAGTCatttttgagaaacattttcGACAATTGAGGGTGGATGCTCTTAAAAATGTAGTTGGCTTCAATTAAAAGCAGCTAATGGTCTTGCAATACCATATGTGGGTTATTTTGAAATAGATGTGATTGTGTTGGGGCAAACTCTTCCAAGGCAAAGCGTTTTGGTTGTGAAAGATCCGGTTGATACACTGTTCCATCAGAAGAAGGCACTTACTCCAGGCCTCTTGGGTATGAATGTAATTGGACAATGTTATAATGACTTGTTTGAAAAACATGGCCCAGCACTATTTTCAGTCCCTCAGGTCAGGCAGGCAGAGTTAGGCTGGAGAGATGCCTTGTCTCAGTGTCACCAAGCTGAGGAGTCCCCCGTCCCTGGATTTGTTGGTTATGTGAGAGTCCAGTCCTGCCAACCTGTCCAGATTCCGGCTGGAACGATGAGtggtgTGACTGGATTATTGCCTGACTGTGGCCTGACCATCTTGTCGAAATAGTGGATGTGAAAGGTATTTaacgttttaatgaaaaagggtttttatttatttttaaattggaaagTGAGTGCATCTTATTTAATGAATTCTCTAATTCTgttgatttttctgtttgtaatggACTGTTTT
>XM_043252880.1
TCTGCTTGATCATCTGGGAGGGGAGGCCAGAATGGAGATAAAACTCCAATCTTCAGCTATCAGGGAAAATCCAGAAgctgtttttgaagtgttaaaagatTTGTATGGGGGGAGACGGACATTTGTGCAATTACAACAGAGGTTTTATGAgcgaaaacaaaaagaaggcGAATCACTTACCGAATTTTCTCATGCTCTTATGTCATTGATGGATGCAATTCTTAACGGGAACCCAGGCAGCGTTCCGAATTCTGACAAAGTGCTTCGCGATCAGTTtgttgaatatgttcaagatgTAATGCTGAAGCGTGAGTTAAAAAGATTTGTGAGGGAGAAACCATCTTCTACATTGCTGGAGGTTCGACGTGAAGCTCTTAGGTGGGTGGAAGAGGGAAATAAGGAAACAACTGCCTTATATTCTCAGTCATGGTGTAACGCTACTCATGGTAGGGTTATTGATATGGAGCCTAAGGTTAGGTTCCAGGATTCTACAGACTTAAAGGAGGTTAAGGAGATGTTAAAACAACAGCAAGTACAAATAAATGACCTTACCCAGCGTTTTGATAGTTTTATGTCTCAGAGGAATGATCCACCTGTTGTTCCTTCAACTAGGCAGAATTCTTCACGTCGATGCCTTCGCTGTAATAGAGTTGGGCATATTGCCAGATACTGTCGGTCATCCTGGCCTGTTGAGTCAAATGCTAGGTCACCTCAGGCAaatgtcaatgagacttctgttGGGGAACCTGATAGTGTAGCCCCTCCTGCAATCTTGAGTCAGATCGCAGAGGAAGCTAGTGAAGCCGCACAAACTCCTGTGTGCCCTACTATTTTGCAGCGTCTTGTGGGCAAATGCCCTATTGTGACTGCGGTAATGGGGGGGGTTGAGATCTCATGTTTACTGGACACTGGGTCAATGGTAACTACTGTAACAGAGTCatttttgagaaacattttcGACAATTGAGGGTGGATGCTCTTAAAAATGTAGTTGGCTTCAATTAAAAGCAGCTAATGGTCTTGCAATACCATATGTGGGTTATTTTGAAATAGATGTGATTGTGTTGGGGCAAACTCTTCCAAGGCAAAGCGTTTTGGTTGTGAAAGATCCGGTTGATACACTGTTCCATCAGAAGAAGGCACTTACTCCAGGCCTCTTGGGTATGAATGTAATTGGACAATGTTATAATGACTTGTTTGAAAAACATGGCCCAGCACTATTTTCAGTCCCTCAGGTCAGGCAGGCAGAGTTAGGCTGGAGAGATGCCTTGTCTCAGTGTCACCAAGCTGAGGAGTCCCCCGTCCCTGGATTTGTTGGTTATGTGAGAGTCCAGTCCTGCCAACCTGTCCAGATTCCGGCTGGAACGATGAGtggtgTGACTGGATTATTGCCTGACTGTGGCCTGACCATCTTGTCGAAATAGTGGATGTGAAAGGTTTGCAGTGTGATTGCTGTGAGCTTGGCTGCTGTGAGAACACTTTGGCTTCTAGGCCCTTCTTTCACTTTCTTAGGCAACCTGTGGCCACCTAGGgccagttttcttttatttctttttctttattttgtgggcatttacatccaaaagggtatgtgatatgttttaacatgtttgacttgtctttaataaaaatgtatttgattcttTAAAGTCACCTCATGGCCCCTTCTTTTGGTTATTGACACAGTGATTGGTCATCAT
>XM_043252881.1
TCTGCTTGATCATCTGGGAGGGGAGGCCAGAATGGAGATAAAACTCCAATCTTCAGCTATCAGGGAAAATCCAGAAgctgtttttgaagtgttaaaagatTTGTATGGGGGGAGACGGACATTTGTGCAATTACAACAGAGGTTTTATGAgcgaaaacaaaaagaaggcGAATCACTTACCGAATTTTCTCATGCTCTTATGTCATTGATGGATGCAATTCTTAACGGGAACCCAGGCAGCGTTCCGAATTCTGACAAAGTGCTTCGCGATCAGTTtgttgaatatgttcaagatgTAATGCTGAAGCGTGAGTTAAAAAGATTTGTGAGGGAGAAACCATCTTCTACATTGCTGGAGGTTCGACGTGAAGCTCTTAGGTGGGTGGAAGAGGGAAATAAGGAAACAACTGCCTTATATTCTCAGTCATGGTGTAACGCTACTCATGGTAGGGTTATTGATATGGAGCCTAAGGTTAGGTTCCAGGATTCTACAGACTTAAAGGAGGTTAAGGAGATGTTAAAACAACAGCAAGTACAAATAAATGACCTTACCCAGCGTTTTGATAGTTTTATGTCTCAGAGGAATGATCCACCTGTTGTTCCTTCAACTAGGCAGAATTCTTCACGTCGATGCCTTCGCTGTAATAGAGTTGGGCATATTGCCAGATACTGTCGGTCATCCTGGCCTGTTGAGTCAAATGCTAGGTCACCTCAGGCAaatgtcaatgagacttctgttGGGGAACCTGATAGTGTAGCCCCTCCTGCAATCTTGAGTCAGATCGCAGAGGAAGCTAGTGAAGCCGCACAAACTCCTGTGTGCCCTACTATTTTGCAGCGTCTTGTGGGCAAATGCCCTATTGTGACTGCGGTAATGGGGGGGGTTGAGATCTCATGTTTACTGGACACTGGGTCAATGGTAACTACTGTAACAGAGTCatttttgagaaacattttcGACAATTGAGGGTGGATGCTCTTAAAAATGTAGTTGGCTTCAATTAAAAGCAGCTAATGGTCTTGCAATACCATATGTGGGTTATTTTGAAATAGATGTGATTGTGTTGGGGCAAACTCTTCCAAGGCAAAGCGTTTTGGTTGTGAAAGATCCGGTTGATACACTGTTCCATCAGAAGAAGGCACTTACTCCAGGCCTCTTGGGTATGAATGTAATTGGACAATGTTATAATGACTTGTTTGAAAAACATGGCCCAGCACTATTTTCAGTCCCTCAGGTCAGGCAGGCAGAGTTAGGCTGGAGAGATGCCTTGTCTCAGTGTCACCAAGCTGAGGAGTCCCCCGTCCCTGGATTTGTTGGTTATGTGAGAGTCCAGTCCTGCCAACCTGTCCAGATTCCGGCTGGAACGATGAGtggtgTGACTGGATTATTGCCTGACTGTGGCCTGACCATCTTGTCGAAATAGTGGATGTGAAAGGGATGCATGGTTACCGTTTACTTTAtggttaaaatattgttttgt
>XR_006252133.1
GGAGCGTTGCTGAGAACTGAGAATATGCTGTACCGACTAATAtggtgTGACTGGATTATTGCCTGACTGTGGCCTGACCATCTTGTCGAAATAGTGGATGTGAAAGGTATTTaacgttttaatgaaaaagggtttttatttatttttaaattggaaagTGAGTGCATCTTATTTAATGAATTCTCTAATTCTgttgatttttctgtttgtaatggACTGTTTT
>XR_006252134.1
TGGAGCGTTGCTGAGAACTGAGAATATGCTGTACCGACTAATAtggtgTGACTGGATTATTGCCTGACTGTGGCCTGACCATCTTGTCGAAATAGTGGATGTGAAAGGTTTGCAGTGTGATTGCTGTGAGCTTGGCTGCTGTGAGAACACTTTGGCTTCTAGGCCCTTCTTTCACTTTCTTAGGCAACCTGTGGCCACCTAGGgccagttttcttttatttctttttctttattttgtgggcatttacatccaaaagggtatgtgatatgttttaacatgtttgacttgtctttaataaaaatgtatttgattcttTAAAGTCACCTCATGGCCCCTTCTTTTGGTTATTGACACAGTGATTGGTCATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252879.1 False 1553 mRNA 0.43 2 17635365 17640897
XM_043252880.1 True 1700 mRNA 0.44 3 17634806 17640897
XM_043252881.1 False 1481 mRNA 0.44 3 17635310 17640897
XR_006252133.1 False 223 transcript 0.35 2 17635365 17635664
XR_006252134.1 False 371 transcript 0.41 3 17634806 17635665

Neighbor

gene id symbol gene type direction distance location
LOC122353782 LOC107727791,LOC107581429,LOC107691380 coding downstream 44583 17578325 ~ 17590223 (-)
LOC122353607 kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395,LOC107656060,LOC107699793 coding downstream 180032 17449267 ~ 17454774 (-)
suclg2 suclg2,LOC107753779,LOC107729402,LOC107699794,LOC107656059 coding downstream 450687 17096321 ~ 17184119 (-)
lrig1 lrig1,LOC107753782,LOC107716980,LOC107557776,LOC107600281 coding downstream 642536 16958903 ~ 16992270 (-)
LOC122353589 LOC103358720 coding downstream 742874 16889590 ~ 16891932 (-)
LOC122354584 si:ch211-232b12.5,LOC107727806,LOC107655055,LOC107562773,LOC107749476,LOC107599616,LOC107685688 coding upstream 41163 17682060 ~ 17692681 (-)
LOC122354069 NA coding upstream 161496 17802393 ~ 17805778 (-)
LOC122354072 NA coding upstream 169023 17809920 ~ 17813328 (-)
eogt eogt,LOC107729408,LOC107558884 coding upstream 411116 18052013 ~ 18064487 (-)
tmf1 LOC107600287,LOC107753777,LOC107656057,LOC107729398,LOC107696823,LOC107558889 coding upstream 424031 18064928 ~ 18074537 (-)
G82577 NA non-coding downstream 71796 17562141 ~ 17563010 (-)
G82582 NA non-coding downstream 88731 17534848 ~ 17546075 (-)
LOC122353733 NA non-coding downstream 158795 17465158 ~ 17476011 (-)
G82578 NA non-coding downstream 187125 17447159 ~ 17447681 (-)
G82496 NA non-coding downstream 635940 16998661 ~ 16998866 (-)
LOC122354623 NA non-coding upstream 139 17641036 ~ 17642527 (-)
G82619 NA non-coding upstream 53022 17693919 ~ 17694508 (-)
G82628 LOC107738115,LOC107654540 non-coding upstream 69554 17710451 ~ 17710806 (-)
LOC122354075 NA non-coding upstream 178005 17818902 ~ 17819459 (-)
LOC122353822 NA non-coding upstream 472451 18113348 ~ 18122237 (-)
G82590 fam120a,LOC107581418,LOC107685640,LOC107691381,LOC107749502,LOC107556189 other downstream 57822 17573602 ~ 17576984 (-)
G82588 phf2,LOC107556181,LOC107685641 other downstream 74970 17550581 ~ 17559836 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other downstream 94635 17537503 ~ 17540171 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other downstream 722232 16778912 ~ 16912574 (-)
LOC122353776 NA other downstream 1028226 16604004 ~ 16606580 (-)
LOC122354587 prpsap2,LOC107720040,LOC107581734,LOC107737786 other upstream 73855 17714752 ~ 17716696 (-)
LOC122353787 prkd2,LOC107728165,LOC107699186,LOC107699228,LOC107752286 other upstream 102019 17742916 ~ 17771610 (-)
LOC122354073 NA other upstream 179376 17820273 ~ 17820936 (-)
tafa4b fam19a4b,fam19a4,LOC107655986,LOC107600333,LOC107558879,LOC107696804,LOC107729393 other upstream 367468 18008365 ~ 18048123 (-)
mustn1b mustn1,mstn1,LOC103145767 other upstream 494987 18135884 ~ 18137388 (-)

Expression


Co-expression Network