b3galt6 (b3galt6,LOC107555998,LOC107714504,LOC107699339,LOC107592565,LOC107680432,LOC107751019)


Basic Information

Item Value
gene id b3galt6
gene name b3galt6,LOC107555998,LOC107714504,LOC107699339,LOC107592565,LOC107680432,LOC107751019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3378085 ~ 3381338 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252882.1
CGACCGTCCGGTCCGGTAGGCGGCGCTCGTCGCCCGCGCAGCTGTCGGGGCGTCGCGGCTTCTTCGGTCCGTGGTCGTGAACGGGAAGTGCGGAGCGTGTGCGTGCGTTTGAGCtggaaaaaacataataataatgacgCGCTCAAAACGCGAATTAAAAAGTGTGTCGTTTTTAGTCGTTGCGGGAGGCGCGTGCGCCTGCTGCGTGTAAATATTGTGCGCTTCGTCTGGAGAGGCAGAAGACGGCGAGTTGTGGTTCATCTCCAGCCCGTCCACAGctgctgcaaaacaaaacagcctCTTATGATAAAGATGCTCAGGATGATTCATAAGCGTGGTAAATGATTACTTTCAGGGGACTCTAAGTTACCAGTGACATCATGAATTTGGTCCGTCTTGTGTGTCGTCACAAGACTGCCCTGGCACTCGGTGTCTTCTTCCTATTTGCCGTCGTCCTTCTGTTTCTCGCCAAATGCACGTCAGAGACGCTGAAGCCAGCCGAGTCCCCAGGTGTGGCGCCACGGGCCGAGTCCCATCAGAAGCAGCCGGCAGGGCCTCCTCGCACCAAAGAGCTCTCCACGTTCCTGGTGGTTCTCATCACCACGGGCCCAAAGTACACAGAGCGGCGCAGCATCATCCGGAGCACCTGGCTGACCAAACACGATCCCGACGTTCTCTACTGGTTCGTCATCGGCACCGAGGGTTTGCCTCCAGAAGACCTGCAGAACCTGGGCACCGAGCAGATCCGTCACCATGACCTCCTCCTGCTCCCTGACCTCCGGGATTCGTACGAGAACCTCACGCTGAAGCTCCTCCACATGTACTCCTGGTTGGACCAAAACGTGGAGTTTAAATTCGTCCTGAAGGCTGACGATGACACCTTTGCTCGCTTGGATCTCCTCAAAGACGAGTTGAAGGCCAAGGAGCCGAGCCGACTCTACTGGGGCTTCTTCTCTGGCCGCGGGAGAGTGAAAACGGCCGGGAAGTGGAAAGAAAGTGCCTGGGAACTGTGCGACTACTACTTACCCTATGCTCTGGGTGGAGGCTACGTGCTTTCCGCCGACCTCGTGCACTACGTGCGTCTCAACGTAGGGTTTCTAAAGACCTGGCAGAGCGAGGACGTGTCCTTGGGTGCCTGGTTAGCCCCTGTAGACGTAAAGCGGGTTCACGACCCACGCTTCGACACGGAGTACAAGTCGCGCGGCTGCAGCAACAAGTACCTGGTCACTCACAAGCAGAGTTTAGAGGACATGCTGGAGAAGCATCAGACACTACAGCGCGATGGGCGTCTGTGCAAAGAGGAAGTCAAACTGAGGCTGTCCTACATTTACGACTGGAACGTCCCGCCTTCGCAGTGTTGCCAGCGGAAGGATGGCATCCCCTGACTCTTTGACACCCGTGATCTTATGCATTTTTTCCACtcgctatttatttatttattatcagtgtcgTGTGTCGAGCCGAAACAGCATTTCTTAACCTTTtgaaaaggctttttaaatTAGAAACGTGGGAGATTATATTACCGaaaaagctgcttttatttgagaCCGAGAGATTCTTTCTGATTCTAAGTGGAGTCGGAGATCCTGGGGGATTGTGGGTGACGTTATATATTTCTGCTGTATTCTCCGCATACACCTTCTTCTGTACATCCATAGAGATCTCCATTTTACCGTTCGTTTATAATCCTGAGATGTTTAGAGCGTGTCTgttgaaatacatttacatgGACGAGAAAAGGAAAGTGCCAGACAAGCAGTTTATTAAAGAAACTTGaagataaatgtttataaaccTAAGTATTTTGACATATGTTGTCCGTTGTGATGGAAAACCCGAGATGGTTTTCTTTGTGAGTTTTACTCACAGATTTGCCATATAATGATAAAGCCGTCTTAAATGGAGAACTTTGGCAGCATTTCTAGTATTTTATGTGTTGTGACTGAGTTGTAAATAACGTACctcaaattttattaaatgtttttgttccgTTTTTACACCAGA

Function

symbol description
b3galt6 Predicted to enable UDP-galactosyltransferase activity. Predicted to be involved in glycosaminoglycan biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome spondylodysplastic type 2 and spondyloepimetaphyseal dysplasia with joint laxity type 1. Orthologous to human B3GALT6 (beta-1,3-galactosyltransferase 6).

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 6

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047220 galactosylxylosylprotein 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252882.1 True 2007 mRNA 0.50 2 3378085 3381338

Neighbor

gene id symbol gene type direction distance location
hipk1b si:ch211-160o17.4,hipk1,LOC107680439,LOC107714503,LOC107699342 coding upstream 463 3361803 ~ 3377622 (+)
acap3b acap3b,LOC107714502,LOC107751006 coding upstream 21929 3300383 ~ 3356156 (+)
ddx19b ddx19,LOC107680447,LOC107572851,LOC107699345,LOC107556002,LOC108255077,LOC108411521,LOC107714482 coding upstream 92545 3278801 ~ 3285540 (+)
si:dkey-33m11.7 LOC107680412,LOC107555990,LOC107714481,LOC107699319,LOC107751023 coding upstream 110809 3263629 ~ 3267276 (+)
dnajc16l LOC107680433,LOC107714499,LOC107572849,LOC107556003 coding upstream 124236 3244829 ~ 3253849 (+)
mapk14b mapk14b,LOC107680431,LOC107714506,LOC107699338,LOC103028137,LOC104939458,LOC108436315 coding downstream 11445 3392783 ~ 3414919 (+)
srpk1b srpk1b,LOC107699336,LOC107714507,LOC107680449,LOC107592563,LOC107751004 coding downstream 33715 3415053 ~ 3452141 (+)
kif21b kif21b,LOC107592560,LOC107680414 coding downstream 86209 3467547 ~ 3532173 (+)
cpne5b cpne5b,LOC107680428,LOC107555996,LOC107751002,LOC107699334,LOC107101079,LOC105027122,LOC107385564 coding downstream 162360 3543698 ~ 3657289 (+)
LOC122353704 LOC107568056,LOC107730479,LOC107657995 coding downstream 343922 3725260 ~ 3730775 (+)
G78886 NA non-coding upstream 86685 3288201 ~ 3291400 (+)
G78815 NA non-coding upstream 261655 3115425 ~ 3116430 (+)
G78797 NA non-coding upstream 375094 3001119 ~ 3002991 (+)
G78784 NA non-coding upstream 564803 2812377 ~ 2813282 (+)
G78772 NA non-coding upstream 677382 2700395 ~ 2700703 (+)
G78898 NA non-coding downstream 10226 3391564 ~ 3391790 (+)
G79002 NA non-coding downstream 158650 3539988 ~ 3541069 (+)
G79021 NA non-coding downstream 320407 3701745 ~ 3702033 (+)
G79022 NA non-coding downstream 322903 3704241 ~ 3726091 (+)
LOC122353534 NA non-coding downstream 364755 3746093 ~ 3747491 (+)
LOC122353713 LOC107714487,LOC107555999 other upstream 16427 3358210 ~ 3361658 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other upstream 105466 3270199 ~ 3272619 (+)
G78790 NA other upstream 551291 2825539 ~ 2826794 (+)
G78763 NA other upstream 697943 2678135 ~ 2680142 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other upstream 1696885 1678226 ~ 1681200 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other downstream 4920 3386258 ~ 3391229 (+)
nwd1 nwd1,LOC107730478,LOC107710443,LOC107658741,LOC107592553,LOC107655543 other downstream 390217 3771555 ~ 3785342 (+)
trnaq-cug_17 NA other downstream 402626 3783964 ~ 3784035 (+)
LOC122354455 LOC107710444,LOC107658759,LOC107592584,LOC107745340,LOC107556194,LOC107698002,LOC107592552,LOC107710448,LOC107658524 other downstream 415068 3796406 ~ 3929528 (+)
adgrl2a adgrl2a,adgrl2 other downstream 679591 4060929 ~ 4152591 (+)

Expression


Co-expression Network