LOC122354629 (LOC107564562,LOC107713253,LOC107702029)


Basic Information

Item Value
gene id LOC122354629
gene name LOC107564562,LOC107713253,LOC107702029
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11384307 ~ 11391458 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252886.1
GAGCCGTGTGGCGCTgatatctctctcacacacacacacacacacacacacacacacacacacacacactcgtcagTAGTCGACCGAACGCCCGTGCGATGGCCCTCCGTTTCCTCCTGTTGTCACTCTGCGTTTTGTTGGAACCCGTGACGGAAATCGATGCACGTGTTTTTTGTGGTGTGGTTGATCTCTGTGCAGGTGGTCTGCTTCTGAAGCCGGTTCTGTCTGGACCCAGCGAGGCCTACGTGAGATCTCAGGTCCAGTTTGACTGTGCGGTTCCAGGCTGGTCTTCACCTCTGACCTTTGAACTCTTGAAGGACGCTGGGGATCTCATCGCGGCAGAGAGCAACGTCAAGGTCACCTTCACCCTACAGGTCACCGAGGGGTCAGCGGGCGAGTACTACTGCAGACTGACCTCCGGGGGTCAGACCAGCAACTCCATCCACCTCCATGCAGTGATTCCTGTGGTAGGAGCCCGTCTGAGCTCAGAGCCCGATCCAGCGGTCATCTATGAAGGACAGAAGCTGGTCCTGCGCTGTCTCGTCAGGAAGGGGACACGTCTGTCCTTCACGTGGTACCAGGACGCACAGCTAGTGACCTCCTCGTCCGAGCTCCACCGGCTCTCTGGAGACACTCTCACGGTGGAGCGAGCGAccgcagtgcatgctgggatataCTCGTGCACGGCTCAAAACCAGATGAGCGTCAACCCCAGATTCTCCAGCAGCCGAAACCTCCACGTCACGGTCAAAAAGCACATGTCGGCGCCGTCGTTATCCTTCTCGGTCTTCTCTAACGGCTCCGGGCTGACGGCTAACATCAGCTGTGGTTCTGAGCGAGGCTCTCCGCCCGTGACGTTCAGACTGATGCTGGACGGCCGGGAGCTGGAGGCCAAGCGAGAGGATTCGCTGGAGTCCTGGTTCCTTCTGCCCGTCTCTGAGGGCCGGGATCTGGGAGCCGCTCGATGTCAAGCTCAAACGGACACACAGCAGCTAATATCTGATCCCGTACGTTTACTCGTGGTTCCAGTAGGTGGCGCTGTGCGCGTCACGGTACAGTATCTCCACGACGCCGACGGGACGCTGGCAGCCGCCCGGCTCCGATGTGTCCCAGACAGAGGAACCTTCCCAGCGTTCTCCTGGAGTCTGAACCGCTCGTCTCTTCCAGCGGAGGGCAGCGCTCACGCGGTCGCTGGCGGCGGTCAGATCCTGATCCTCACCGAGGTCAGAGCCGGCGTCTACGGCTGCAGGGCGAGGGACAGTTATAACCTCAGCTCGGTCTGGGTGGAGAGCGAGGACGTCTTGGTCCAGAGGACAGATTTGGCTGCGATGTCGGTGGAGGCCATCGCGCTGATTTTCTGCGGGTTCCTGTCGACTGTGATCGTGTCAGGCTCGTTCTTTGTGTACTGGAGCACCAAGCGGAGTAACGACGCCTGCAAACGTCACAGTCACCAGGATGTGATCCAGTCTGAGATGATGAGAACATTTCCAGCAGCCGGTGTTTCCTCTGAACCTGTGGAAATGAAAACGGTCATCGTGGAGCTTGAGGCCTAGTCTAGACCGGACTGGACCGGACCAGACCAGACCGGACcggaccagaccagaccagaccagaccagaccagaccagaccagaccggACCGGACcggaccagaccagaccagaccagacaaGACTGGagcaga
>XM_043252887.1
GAGCCGTGTGGCGCTgatatctctctcacacacacacacacacacacacacacacacacacacacacactcgtcagTAGTCGACCGAACGCCCGTGCGATGGCCCTCCGTTTCCTCCTGTTGTCACTCTGCGTTTTGTTGGAACCCGTGACGGAAATCGGTGGTCTGCTTCTGAAGCCGGTTCTGTCTGGACCCAGCGAGGCCTACGTGAGATCTCAGGTCCAGTTTGACTGTGCGGTTCCAGGCTGGTCTTCACCTCTGACCTTTGAACTCTTGAAGGACGCTGGGGATCTCATCGCGGCAGAGAGCAACGTCAAGGTCACCTTCACCCTACAGGTCACCGAGGGGTCAGCGGGCGAGTACTACTGCAGACTGACCTCCGGGGGTCAGACCAGCAACTCCATCCACCTCCATGCAGTGATTCCTGTGGTAGGAGCCCGTCTGAGCTCAGAGCCCGATCCAGCGGTCATCTATGAAGGACAGAAGCTGGTCCTGCGCTGTCTCGTCAGGAAGGGGACACGTCTGTCCTTCACGTGGTACCAGGACGCACAGCTAGTGACCTCCTCGTCCGAGCTCCACCGGCTCTCTGGAGACACTCTCACGGTGGAGCGAGCGAccgcagtgcatgctgggatataCTCGTGCACGGCTCAAAACCAGATGAGCGTCAACCCCAGATTCTCCAGCAGCCGAAACCTCCACGTCACGGTCAAAAAGCACATGTCGGCGCCGTCGTTATCCTTCTCGGTCTTCTCTAACGGCTCCGGGCTGACGGCTAACATCAGCTGTGGTTCTGAGCGAGGCTCTCCGCCCGTGACGTTCAGACTGATGCTGGACGGCCGGGAGCTGGAGGCCAAGCGAGAGGATTCGCTGGAGTCCTGGTTCCTTCTGCCCGTCTCTGAGGGCCGGGATCTGGGAGCCGCTCGATGTCAAGCTCAAACGGACACACAGCAGCTAATATCTGATCCCGTACGTTTACTCGTGGTTCCAGTAGGTGGCGCTGTGCGCGTCACGGTACAGTATCTCCACGACGCCGACGGGACGCTGGCAGCCGCCCGGCTCCGATGTGTCCCAGACAGAGGAACCTTCCCAGCGTTCTCCTGGAGTCTGAACCGCTCGTCTCTTCCAGCGGAGGGCAGCGCTCACGCGGTCGCTGGCGGCGGTCAGATCCTGATCCTCACCGAGGTCAGAGCCGGCGTCTACGGCTGCAGGGCGAGGGACAGTTATAACCTCAGCTCGGTCTGGGTGGAGAGCGAGGACGTCTTGGTCCAGAGGACAGATTTGGCTGCGATGTCGGTGGAGGCCATCGCGCTGATTTTCTGCGGGTTCCTGTCGACTGTGATCGTGTCAGGCTCGTTCTTTGTGTACTGGAGCACCAAGCGGAGTAACGACGCCTGCAAACGTCACAGTCACCAGGATGTGATCCAGTCTGAGATGATGAGAACATTTCCAGCAGCCGGTGTTTCCTCTGAACCTGTGGAAATGAAAACGGTCATCGTGGAGCTTGAGGCCTAGTCTAGACCGGACTGGACCGGACCAGACCAGACCGGACcggaccagaccagaccagaccagaccagaccagaccagaccagaccggACCGGACcggaccagaccagaccagaccagacaaGACTGGagcaga
>XM_043252888.1
acacacacacactcgtcagTAGTCGACCGAACGCCCGTGCGATGGCCCTCCGTTTCCTCCTGTTGTCACTCTGCGGTGGTCTGCTTCTGAAGCCGGTTCTGTCTGGACCCAGCGAGGCCTACGTGAGATCTCAGGTCCAGTTTGACTGTGCGGTTCCAGGCTGGTCTTCACCTCTGACCTTTGAACTCTTGAAGGACGCTGGGGATCTCATCGCGGCAGAGAGCAACGTCAAGGTCACCTTCACCCTACAGGTCACCGAGGGGTCAGCGGGCGAGTACTACTGCAGACTGACCTCCGGGGGTCAGACCAGCAACTCCATCCACCTCCATGCAGTGATTCCTGTGGTAGGAGCCCGTCTGAGCTCAGAGCCCGATCCAGCGGTCATCTATGAAGGACAGAAGCTGGTCCTGCGCTGTCTCGTCAGGAAGGGGACACGTCTGTCCTTCACGTGGTACCAGGACGCACAGCTAGTGACCTCCTCGTCCGAGCTCCACCGGCTCTCTGGAGACACTCTCACGGTGGAGCGAGCGAccgcagtgcatgctgggatataCTCGTGCACGGCTCAAAACCAGATGAGCGTCAACCCCAGATTCTCCAGCAGCCGAAACCTCCACGTCACGGTCAAAAAGCACATGTCGGCGCCGTCGTTATCCTTCTCGGTCTTCTCTAACGGCTCCGGGCTGACGGCTAACATCAGCTGTGGTTCTGAGCGAGGCTCTCCGCCCGTGACGTTCAGACTGATGCTGGACGGCCGGGAGCTGGAGGCCAAGCGAGAGGATTCGCTGGAGTCCTGGTTCCTTCTGCCCGTCTCTGAGGGCCGGGATCTGGGAGCCGCTCGATGTCAAGCTCAAACGGACACACAGCAGCTAATATCTGATCCCGTACGTTTACTCGTGGTTCCAGTAGGTGGCGCTGTGCGCGTCACGGTACAGTATCTCCACGACGCCGACGGGACGCTGGCAGCCGCCCGGCTCCGATGTGTCCCAGACAGAGGAACCTTCCCAGCGTTCTCCTGGAGTCTGAACCGCTCGTCTCTTCCAGCGGAGGGCAGCGCTCACGCGGTCGCTGGCGGCGGTCAGATCCTGATCCTCACCGAGGTCAGAGCCGGCGTCTACGGCTGCAGGGCGAGGGACAGTTATAACCTCAGCTCGGTCTGGGTGGAGAGCGAGGACGTCTTGGTCCAGAGGACAGATTTGGCTGCGATGTCGGTGGAGGCCATCGCGCTGATTTTCTGCGGGTTCCTGTCGACTGTGATCGTGTCAGGCTCGTTCTTTGTGTACTGGAGCACCAAGCGGAGTAACGACGCCTGCAAACGTCACAGTCACCAGGATGTGATCCAGTCTGAGATGATGAGAACATTTCCAGCAGCCGGTGTTTCCTCTGAACCTGTGGAAATGAAAACGGTCATCGTGGAGCTTGAGGCCTAGTCTAGACCGGACTGGACCGGACCAGACCAGACCGGACcggaccagaccagaccagaccagaccagaccagaccagaccagaccggACCGGACcggaccagaccagaccagaccagacaaGACTGGagcaga
>XM_043252889.1
CGCTGGGGATCTCATCGCGGCAGAGAGCAACGTCAAGGTCACCTTCACCCTACAGGTCACCGAGGGGTCAGCGGGCGAGTACTACTGCAGACTGACCTCCGGGGGTCAGACCAGCAACTCCATCCACCTCCATGCAAAAGAAGATAGTCATGTACACCCAGGATGCTTCGAGGCGAGTGAAACACGGACTGATTTCGATCTATCATCATGTTTGGTTGTGTTGGATGTCAGTTCCTGTGGTAGGAGCCCGTCTGAGCTCAGAGCCCGATCCAGCGGTCATCTATGAAGGACAGAAGCTGGTCCTGCGCTGTCTCGTCAGGAAGGGGACACGTCTGTCCTTCACGTGGTACCAGGACGCACAGCTAGTGACCTCCTCGTCCGAGCTCCACCGGCTCTCTGGAGACACTCTCACGGTGGAGCGAGCGAccgcagtgcatgctgggatataCTCGTGCACGGCTCAAAACCAGATGAGCGTCAACCCCAGATTCTCCAGCAGCCGAAACCTCCACGTCACGGTCAAAAAGCACATGTCGGCGCCGTCGTTATCCTTCTCGGTCTTCTCTAACGGCTCCGGGCTGACGGCTAACATCAGCTGTGGTTCTGAGCGAGGCTCTCCGCCCGTGACGTTCAGACTGATGCTGGACGGCCGGGAGCTGGAGGCCAAGCGAGAGGATTCGCTGGAGTCCTGGTTCCTTCTGCCCGTCTCTGAGGGCCGGGATCTGGGAGCCGCTCGATGTCAAGCTCAAACGGACACACAGCAGCTAATATCTGATCCCGTACGTTTACTCGTGGTTCCAGTAGGTGGCGCTGTGCGCGTCACGGTACAGTATCTCCACGACGCCGACGGGACGCTGGCAGCCGCCCGGCTCCGATGTGTCCCAGACAGAGGAACCTTCCCAGCGTTCTCCTGGAGTCTGAACCGCTCGTCTCTTCCAGCGGAGGGCAGCGCTCACGCGGTCGCTGGCGGCGGTCAGATCCTGATCCTCACCGAGGTCAGAGCCGGCGTCTACGGCTGCAGGGCGAGGGACAGTTATAACCTCAGCTCGGTCTGGGTGGAGAGCGAGGACGTCTTGGTCCAGAGGACAGATTTGGCTGCGATGTCGGTGGAGGCCATCGCGCTGATTTTCTGCGGGTTCCTGTCGACTGTGATCGTGTCAGGCTCGTTCTTTGTGTACTGGAGCACCAAGCGGAGTAACGACGCCTGCAAACGTCACAGTCACCAGGATGTGATCCAGTCTGAGATGATGAGAACATTTCCAGCAGCCGGTGTTTCCTCTGAACCTGTGGAAATGAAAACGGTCATCGTGGAGCTTGAGGCCTAGTCTAGACCGGACTGGACCGGACCAGACCAGACCGGACcggaccagaccagaccagaccagaccagaccagaccagaccagaccggACCGGACcggaccagaccagaccagaccagacaaGACTGGagcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252886.1 True 1684 mRNA 0.59 9 11384307 11391458
XM_043252887.1 False 1645 mRNA 0.59 9 11384307 11391458
XM_043252888.1 False 1561 mRNA 0.60 8 11384364 11391458
XM_043252889.1 False 1456 mRNA 0.59 7 11385307 11391458

Neighbor

gene id symbol gene type direction distance location
tmc8 LOC107713252,LOC107702016 coding upstream 276 11375307 ~ 11384031 (+)
notum1b notum,LOC107733046,LOC108443886,LOC107564571 coding upstream 31836 11342521 ~ 11352471 (+)
trappc10 trappc10,LOC107657364,LOC107572046,LOC107693011,LOC107713874,LOC102780331 coding upstream 135475 11227989 ~ 11248832 (+)
ankrd13c ankrd13c,LOC107693019 coding upstream 174016 11194251 ~ 11210291 (+)
rfc4 rfc4 coding upstream 194473 11185451 ~ 11189834 (+)
si:dkey-93h22.7 NA coding downstream 1435 11392893 ~ 11396627 (+)
syngr2b syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198 coding downstream 5588 11397046 ~ 11404549 (+)
afmid afmid coding downstream 26147 11417605 ~ 11424214 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding downstream 33149 11424607 ~ 11434524 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding downstream 78861 11470319 ~ 11485482 (+)
G80784 NA non-coding upstream 56629 11326427 ~ 11327678 (+)
G80661 mafgb,mafg,LOC107564557,LOC107702026 non-coding upstream 114600 11263422 ~ 11269707 (+)
G80766 NA non-coding upstream 123932 11258381 ~ 11260375 (+)
G80764 NA non-coding upstream 133600 11249895 ~ 11250707 (+)
G80763 NA non-coding upstream 151789 11232087 ~ 11232518 (+)
G80667 LOC107567635 non-coding downstream 46449 11437907 ~ 11438726 (+)
LOC122353945 NA non-coding downstream 52182 11443640 ~ 11447521 (+)
G80668 NA non-coding downstream 57591 11449049 ~ 11452138 (+)
G80804 NA non-coding downstream 80513 11471971 ~ 11472301 (+)
G80808 NA non-coding downstream 116542 11508000 ~ 11509053 (+)
G80761 NA other upstream 157685 11222347 ~ 11226622 (+)
G80638 NA other upstream 722337 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 913120 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1844186 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1959005 9422950 ~ 9425302 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 114195 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 133565 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 137261 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 188568 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 306866 11698324 ~ 11700214 (+)

Expression


Co-expression Network