syngr2b (syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198)


Basic Information

Item Value
gene id syngr2b
gene name syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11397046 ~ 11404549 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252894.1
CTGCaccgggtgtgtgtgtgtgtgtgtgtcgtgtttTCAGCTGtcgcttgtgtgtgtgcgcgcgcgtgtgtgtgtttgagtgtgtgtgtgtgtgtttcaccgATGGAGTCGAACAGTGCGGCGTACGGAGCCTCGCTCGCCGGAGCGGGATTCGATCCCGTCAAATTCATCAAACAGCCTCAAACTATCATACGGTTCCTCAGCTGGGTGTTTGCCATCGTGGTGTTCGCCTCCATAACCGCCGAAGGTTACGTGAACAGCAGCGTGGAGGCGCAGGTGAAGTGCGTCTTCAACAGGAACGATGGGGCTTGTCATTACGGCGTGGGCATCGGCGTCATCGCCTTCCTGGCCAGCTTCGGCTTCCTATTGGCCGACGCGCTCCTGCCTTCGATGAGCAACGCTCAGGAGAGGAAGTACGTGGTGATGGCTGATCTGGGCTTCTCAGCCGCCTGGACGTTCCTgtggtttgtgtgtttctgtctcatGGCGGATCAGTGGTCAAAGACCCAAGACACCAGCGGCATCCCTAAAGACGCCGTCCACGCCGTCATCgccttctctttcttctccatCGGATcgtggGGAGCGCTGACGTTCCTCGCCCTGGTACGGTTTCGTCAGGGCGTGACAGACGTGACCCAGCACTACGCCGATCCTCCGGCGGACCCCGCCTCTCCGTATCCCTCCACCTACGCTCCGCCCACGTATCCGTCCTTCCAGAACACCGGTCAGGACATCTTCCAGCAGCCGCCCGTCGCCCCGAACCCCGACCCGTCCGGCCAGAGCAGCTATCAGCCGCCCGTCTACTGACCCCCGACCCGCGCCGGGGTCACGTGACGCCGCAGGCAGCCAATAGGAGACTGTTTGGCCtttattgtgtaaatattgCGTTTTCTTACATGGCTGAGTTCAGGCGCTGGAATTAAACGAGTTGTCGTCGTGGAGCAGGTCTGTCGCTCACACTGGAATCAcggcagcagtgtgtgtgtgtgtgtgtgtgtgtgtgttgttaacGTCTTCCCGGATGAATGAGTAGGAATGTGGCGGGAACAAAAAGAGCCCGTTGACCCCGTTTACTAATTGCGTTCCCAGATCACATCCAGTCGAGCCGCAGAGGGGTTTTTACGGTGCTGCTTTCTGCTTCCAAATCTGAAAACATCTGGTTTGATTGAAAAAGATCTACATAAACACACCCTGACGCTCA

Function

symbol description
syngr2b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR2 (synaptogyrin 2).

NR:

description
PREDICTED: synaptogyrin-2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252894.1 True 1204 mRNA 0.57 4 11397046 11404549

Neighbor

gene id symbol gene type direction distance location
si:dkey-93h22.7 NA coding upstream 419 11392893 ~ 11396627 (+)
LOC122354629 LOC107564562,LOC107713253,LOC107702029 coding upstream 5588 11384307 ~ 11391458 (+)
tmc8 LOC107713252,LOC107702016 coding upstream 13015 11375307 ~ 11384031 (+)
notum1b notum,LOC107733046,LOC108443886,LOC107564571 coding upstream 44575 11342521 ~ 11352471 (+)
trappc10 trappc10,LOC107657364,LOC107572046,LOC107693011,LOC107713874,LOC102780331 coding upstream 148214 11227989 ~ 11248832 (+)
afmid afmid coding downstream 13056 11417605 ~ 11424214 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding downstream 20058 11424607 ~ 11434524 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding downstream 65770 11470319 ~ 11485482 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding downstream 81967 11486516 ~ 11499922 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding downstream 107784 11512333 ~ 11523658 (+)
G80784 NA non-coding upstream 69368 11326427 ~ 11327678 (+)
G80661 mafgb,mafg,LOC107564557,LOC107702026 non-coding upstream 127339 11263422 ~ 11269707 (+)
G80766 NA non-coding upstream 136671 11258381 ~ 11260375 (+)
G80764 NA non-coding upstream 146339 11249895 ~ 11250707 (+)
G80763 NA non-coding upstream 164528 11232087 ~ 11232518 (+)
G80667 LOC107567635 non-coding downstream 33358 11437907 ~ 11438726 (+)
LOC122353945 NA non-coding downstream 39091 11443640 ~ 11447521 (+)
G80668 NA non-coding downstream 44500 11449049 ~ 11452138 (+)
G80804 NA non-coding downstream 67422 11471971 ~ 11472301 (+)
G80808 NA non-coding downstream 103451 11508000 ~ 11509053 (+)
G80761 NA other upstream 170424 11222347 ~ 11226622 (+)
G80638 NA other upstream 735076 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 925859 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1856925 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1971744 9422950 ~ 9425302 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 101104 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 120474 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 124170 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 175477 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 293775 11698324 ~ 11700214 (+)

Expression


Co-expression Network