tmc8 (LOC107713252,LOC107702016)


Basic Information

Item Value
gene id tmc8
gene name LOC107713252,LOC107702016
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11375307 ~ 11384031 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252896.1
TCACACACAGAAGCGCTgaagagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagacacATGATGGAGAAAGAAGACGGGAGAGCAGACTTCCACAGACTGATGTCAGCTGAGAGCTGGGGCTCCGATCTGTCCAGCGACTCGTGCGAATATTACCAGACGGAGATATTCGGTCTGCTGCCGAGCTCTCAGGCTCATCGACGGCTTCACGCGGAAACCATCGCCGACCGGAAGGAGCAGAGTCTGCTGGACAGAGTGTCCTGGGACCCCAGCGTCCCGCTCCGAGATCTGCCCGTCTGTCTGCAGGACAAGAGAGACGTCCGAGAGCAGCAGCACCTGCAGAGACACAGCATTGGCCACTGGGACTCGTGGAGGCGGAGccagaacaaaacaaagcagcGCTTAAAGGAGCATGTGGGCGGGGCCATATCGGCACTGTTGCCGTGGAGACACACGCTCTATAAGATTGAAGGTCAGTTTGGGGTCGGGGTGAAGGCGTACTTCGTGTTCCTGCGTTACCTGCTGTGTCTGAACCTGCTGTACTGCTTCATTATCACCGGATCGGTGCTGACGCCGTCGCTGGTGTTCAGACGGAGCTCAGAGGATCACGGATCCCTGGGATTCCAGAACTTCTCGTTCAAAGACTTCTTTGTCGGCTCGggtgTTCTTGAGTCTTCCCCGGTGTTTCATAGCTTCTTCACTAACGGGTCTCTTCGTTATGAATGTCTAAACACTCCGATCCTCTTTCTCCTCGGCATGACCTCTGTCCTCTTCCTCAGCATCATCATGGTGGTCCGCAGGACAGTGGTTGGCTACAAGCAGTCGTGGCTCACAGGAAACCGCTACACCTCCAACCTGAGTTATAAGGTTTTCTGTGGCTGGGATTTCTGCATCCAGAGCCCTCAAACAGCGTCACTGAAACAAAACTTCATCCGAAACGAACTCAAGATGGATCTAGAAGAGCAGACGTTTAAACAGAAGGTCCAGGAGCGATCTCTCAGGCGCTGGATCGAACTCATCTCCCTGAGGATCCTTCTGAACTTCATCGTGCTCGTTTTTCTGGGAGGCTCGTTCACCCTCATCTGTTTTGCTCTCCAAATGTCCAAAGATGAGTGCGTCCATCACtggagtgtgtgtctgatgtTGGAGTACCTTCCTCCGATCACGATGACGACGGTAAACTACGTACTTCCACACGTCTTCAGCAAGATCTCAGAGTTTGAAGACTACTCGCTCACCATTCAGCTGAACCTCACACTGATCAGGAGTATCTTCCTAAAGCTGGCGTCTTTGAGCATCtatctgtttttcttcattacTTCTTCATCGGCCTCCAAAAAACAAGTCAAGTGCAAAGAGAACGAGTTTGGGAAGGAGATGTACAAACTGACCATCTTTAACCTCCTGGAGTGTTTCTTCACCGCGTTTTGTGTGGCCTACCCAAGAACGTTACTGGTGGAGAGGTTTCCGTCTTCAAAGATGGCGAAGTTATTAGGCAAGAAGCAGTTCGAGATCTCCTTCAACGTTCTGGACCTGGTCAACAGTCAGACGGTCACGTGGGTCGGCGTCTTTTACTGCCCTCTGCTGCCGGCCATCAACGCCATCAGGCTGTTTTTCCTCTTCTATGTCAAGAagTTCACGGCGGTGCGGTGTTGTGCTCCGGCTCAGAGGATGTTCAGGACCGCCAGTTCATCCGTTCTCTTCCACTTCATGCTGTTGTTGGGTCTCTTCGTGGCTGTGGTCACATTAGTTGTCAACATCAACAGGTTTGATCAGGGCGGCTGTGGCCCGTTTGAAGGCAACGGGACGGTGTTTAACGTGACCAGTGTGTGTATAAACACTCTTCCCATATCAGTCCAGACCACCATCAACTACATCTCATCCGAGGCCTTCGCCTTCACGCTCATACTGGCTgaagttgtGATCCTGACGTCGTACGTGTCTCGTGGACGAGCCAATCGTAAGGCCATCGAGAGACTGAAGGACATGCTGGTGATGTGCAGCTCTGATAAACGCTTCCTGGTGAAGCAGCACTCGACGTTCATGAGACGACAGCAGAGGACACGCTAACGTCACGCCACGGAAACGGGATTAAGATGGGATTTGCACTGATTTCATCTCATTCAGAGCTTTCTTCTATGTGctcatgacctctgacctctgagtTCAGGTCAAAGTTTACCTGAATACCAGTGACCATGTATAAAGGCATTAACAATCGCTATATTTGCTTTCACATTAATACACAATAACTTCAAGCTGCAGTTTTGTTGCCTGTAActtgaaatgcttttaaagttttttgattggctgtcaatattaaacaaataatagctTTGAAAGTCACGCTTGCTCTGTACTTGTGTTATTGTTAGAATGTTAAATGTTAGTTATATTCATCATACTCTATCAGTTCTGTATGTAAGTTGTGTGATGCTTTTACGTTTTAAAGTTCTTGGTCAGTATTATTTACTCGTAATATAATCATTTTCGTTTGTTATGCTTTAATTTCTTAAGTGTGTGGATTTCAGGTCGTTCTTCAGTGTATTCTCACAATAAAGTATCACTGATGTACTA

Function

NR:

description
transmembrane channel-like protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252896.1 True 2579 mRNA 0.49 16 11375307 11384031

Neighbor

gene id symbol gene type direction distance location
notum1b notum,LOC107733046,LOC108443886,LOC107564571 coding upstream 22836 11342521 ~ 11352471 (+)
trappc10 trappc10,LOC107657364,LOC107572046,LOC107693011,LOC107713874,LOC102780331 coding upstream 126475 11227989 ~ 11248832 (+)
ankrd13c ankrd13c,LOC107693019 coding upstream 165016 11194251 ~ 11210291 (+)
rfc4 rfc4 coding upstream 185473 11185451 ~ 11189834 (+)
gemin6 gemin6,LOC107682381 coding upstream 228486 11145189 ~ 11146821 (+)
LOC122354629 LOC107564562,LOC107713253,LOC107702029 coding downstream 276 11384307 ~ 11391458 (+)
si:dkey-93h22.7 NA coding downstream 8862 11392893 ~ 11396627 (+)
syngr2b syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198 coding downstream 13015 11397046 ~ 11404549 (+)
afmid afmid coding downstream 33574 11417605 ~ 11424214 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding downstream 40576 11424607 ~ 11434524 (+)
G80784 NA non-coding upstream 47629 11326427 ~ 11327678 (+)
G80661 mafgb,mafg,LOC107564557,LOC107702026 non-coding upstream 105600 11263422 ~ 11269707 (+)
G80766 NA non-coding upstream 114932 11258381 ~ 11260375 (+)
G80764 NA non-coding upstream 124600 11249895 ~ 11250707 (+)
G80763 NA non-coding upstream 142789 11232087 ~ 11232518 (+)
G80667 LOC107567635 non-coding downstream 53876 11437907 ~ 11438726 (+)
LOC122353945 NA non-coding downstream 59609 11443640 ~ 11447521 (+)
G80668 NA non-coding downstream 65018 11449049 ~ 11452138 (+)
G80804 NA non-coding downstream 87940 11471971 ~ 11472301 (+)
G80808 NA non-coding downstream 123969 11508000 ~ 11509053 (+)
G80761 NA other upstream 148685 11222347 ~ 11226622 (+)
G80638 NA other upstream 713337 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 904120 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1835186 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1950005 9422950 ~ 9425302 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 121622 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 140992 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 144688 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 195995 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 314293 11698324 ~ 11700214 (+)

Expression


Co-expression Network