cdc42 (cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645)


Basic Information

Item Value
gene id cdc42
gene name cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7272842 ~ 7286099 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252919.1
CGAAGTTCTTGCTCTAATGAAGTGTGATGGAGTGACGCAGCGTCGCGCCCCTGCTCTTCAGTGCTGGAAACCCCGAGCGCGCGGACCTGCCAACGCCCGGCgcagagaaacaaacagaaaggaTACGATCTTGAATGAGAACAGTGGATTTGTAAAAGCACAGCTATGCAGACGATCAAGTGCGTCGTTGTTGGTGATGGAGCAGTGGGTAAAACCTGTCTATTAATCTCCTATACAACTAATAAATTCCCCTCCGAATATGTACCAACGgTCTTTGATAACTATGCAGTTACGGTTATGATTGGTGGTGAGCCGTACACCCTCGGGCTGTTTGACACTGCAGGTCAGGAAGATTATGATAGATTACGACCCCTGAGCTACCCTCAGACAGATGTCTTCTTAGTCTGTTTCTCAGTTGTTTCACCTTCTTCGTTTGAAAACGTCAAAGAAAAGTGGGTACCTGAGATCACCCACCACTGTCCAAAGACCCCCTTCCTGCTGGTGGGCACGCAGATTGATCTGAGAGATGATCCTTCTACCATCGAGAAGCTTGCCAAGAATAAACAGAAACCCATCACTCCGGAGACAGCAGAGAAGCTGGCCCGTGATCTGAAGGCTGTCAAATATGTGGAGTGCTCCGCTCTGACGCAGAAAGGCCTAAAGAACGTATTTGATGAGGCGATTTTGGCAGCCCTGGAGCCCCCAGAGCCCAAGAAGAAGCGTAAATGTGTGCTGCTATGAGCGCCCTGTTACACATCCCTCCCCCTCCCTTCTTTGCTCTGCTAAGGCTGGTCCACAGCTTTACACTCTAAAAAGCAATGTGTAAAAGAAGTGAGTTTCAATATTTGCTCTgcaataaagatataaagagTACCCACtatacacatgcacaaacacacacaacaaaaaccacacatgcccattaatataaaaaaaaaaaaaaaaaaacctagagGGCCTTTTCTAGTTTTGATTCCAGGAGTCTTACTTCTGTACTTCATGGTGAGATTGATTAGAGATGCTGCCTTGGTTTGCCAGCCATGTTTtgacttttaatgtaaaaagtagTACCGCTGCACAGGGGTATCTCGGTCGCTAAAGTCTTAAGCGGGTTCGGGGTTGTGTTTCTTTTCATTGTGCGTTCAAAATGGCAACCGAATCACTTGATCGTAAACGCCACTAGCCcaagaaataaaagaattgTTATATTTGGAGATGTGTTCGCGAGTCCGCCGTAATCCCTCTCCCACCCTCGAACAACATCACCCGAAGTGCTTAGAAATAGCTCCTTGTTCTTTGCCAATATTCCCATTTAATAGGCGTTCAAGACGGTAGTCCTGTAAATGGTTTGTTTGCTTTCTGTGCATAATTTTGACTcgttgcaaagaaaaaaaaaaaaacctcggTCATTTCAAGCAGGGAACTTTCTAACAGTGTTAGCAGAACAAGTGGCGTGTTCTAATGCGTTGCTAGGGACCATGGAAGCGTTTTTCCAGAACTTGTGATTCATGTAGGTAAGCCTCCAGGTTCCTTCGGATAggataacattaataataatgtaagcTGACAAAAGTTGTTGTAGGCtccagttgtttttatttcaccaaatgttttttttttttttctctgtgattattgatttttgtttgtttttattttaattttgttttcatcagaGGTTCATTTCACTCCGTTCAGTTCACAGCAATCCTCTGatccacctgtttttttttttttaatcaagcatCAGTTGAATGTTTATATTGTAGTGCAAGATCACCTCTCTCAGAACCAAGAAGCACGTTTAATAGCGCAGCACAGGTGGATCAGAGTTAGTTTGATTCCAGTCTATGACCCTTCCctagttgtttgtttgtctgttttgatttgtttgttttggtgtaaACCAAATGCTCTGTATGAAGTCCCTCCTTTGTACTGTATATGCattcttttgagaaaaaaaatattaaacttataCCTTAATTGCCTTTA
>XM_043252920.1
CGAAGTTCTTGCTCTAATGAAGTGTGATGGAGTGACGCAGCGTCGCGCCCCTGCTCTTCAGTGCTGGAAACCCCGAGCGCGCGGACCTGCCAACGCCCGGCgcagagaaacaaacagaaaggaTACGATCTTGAATGAGAACAGTGGATTTGTAAAAGCACAGCTATGCAGACGATCAAGTGCGTCGTTGTTGGTGATGGAGCAGTGGGTAAAACCTGTCTATTAATCTCCTATACAACTAATAAATTCCCCTCCGAATATGTACCAACGgTCTTTGATAACTATGCAGTTACGGTTATGATTGGTGGTGAGCCGTACACCCTCGGGCTGTTTGACACTGCAGGTCAGGAAGATTATGATAGATTACGACCCCTGAGCTACCCTCAGACAGATGTCTTCTTAGTCTGTTTCTCAGTTGTTTCACCTTCTTCGTTTGAAAACGTCAAAGAAAAGTGGGTACCTGAGATCACCCACCACTGTCCAAAGACCCCCTTCCTGCTGGTGGGCACGCAGATTGATCTGAGAGATGATCCTTCTACCATCGAGAAGCTTGCCAAGAATAAACAGAAACCCATCACTCCGGAGACAGCAGAGAAGCTGGCCCGTGATCTGAAGGCTGTCAAATATGTGGAGTGCTCCGCTCTGACGCAGCGAGGTCTGAAGAATGTATTTGATGAAGCTATCCTAGCTGCCCTCGAACCTCCTGAAACGCAGCGAAAACGGAAGTGCTGTATATTTTAAACCTCTCTTTCTAACGCCCCAACTCTTCCCCAGATGTTTGCTGCTTCCTTTAGTTACCTCTTGCTCCACAGAAGTTTCCCAATCTCTTAAGTGACGTCACATGTATCTTGTTTCACCAATACTAAAGGATTTGCTTTTGCTATTTACTTTTGTTCTACTTTTTTGTTGGCTTTGAAGATCGCTAACATTAGACCCATCTATTGAGAGTGACATTTGTCTCCTTTctacaaatttttattattattattattattattattattatttgcactttgggtttaaaaataaaaatgtggaaGTTTACAACGAAGggttgaatatatatatatatatattttgctttacGTAATATGTTGCTTTAGACATGAAAGTTTCTagtctttatttcattattagcGTTACGAGCAGGCAAAGGTAAAATAGTTCAATACTTTGCTGCTCAGTTTATTTTCAAGAATCATTATTCCTTATgtcagtgtatttattttgtactgcaACAATTGTATCATATAAAGTTAATTCTAAACTTAACGTATGGCTACAATTTGCAATTTGGTGCCATTCTTATCCTTACAACGTCTTGAGAGTTTAAATGGCTTAATATAATCCTGTGAACTGATTTGTGCCATTAATAAAGGACAGCTGCAATTGCCATTA

Function

symbol description
cdc42 Predicted to enable GTP binding activity and GTPase activity. Involved in cell surface receptor signaling pathway; positive regulation of cell migration involved in sprouting angiogenesis; and positive regulation of filopodium assembly. Acts upstream of or within several processes, including camera-type eye development; melanosome transport; and plasma membrane bounded cell projection assembly. Predicted to be located in midbody and plasma membrane. Is expressed in blastodisc; brain; eye; and pronephros. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).

NR:

description
cell division control protein 42 homolog isoform 2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252919.1 True 1995 mRNA 0.42 6 7272842 7286099
XM_043252920.1 False 1398 mRNA 0.41 6 7275605 7286099

Neighbor

gene id symbol gene type direction distance location
camta1b LOC107751174,LOC107654393,LOC107756644,LOC107654440,LOC107582404 coding downstream 151714 6848989 ~ 7121128 (-)
per3 per3,LOC107751173,LOC107756610,LOC107582444 coding downstream 434010 6818532 ~ 6838832 (-)
ccdc50b LOC107592910,LOC107756624,LOC107751234,LOC107654367,LOC107654434 coding downstream 1341358 5916996 ~ 5931484 (-)
si:dkey-264d12.5 LOC107592908,LOC107756646,LOC107654411,LOC107654359 coding downstream 1376627 5887765 ~ 5896215 (-)
LOC122353621 LOC107756649,LOC107592864,LOC107654397 coding downstream 1404767 5861347 ~ 5868075 (-)
c11h1orf50 zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182 coding upstream 4511 7290610 ~ 7294450 (-)
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding upstream 203184 7489283 ~ 7495714 (-)
mfsd4aa mfsd4a,LOC107756626,LOC107654377,LOC107582392,LOC107751189 coding upstream 456146 7742245 ~ 7753814 (-)
cdk18 si:dkey-166c18.1,cdk18,LOC107654374,LOC107756627,LOC107698687,LOC108254840,LOC101468598 coding upstream 468427 7754526 ~ 7830238 (-)
si:ch211-112f3.4 LOC107582165,LOC107654372,LOC107743264,LOC107751241 coding upstream 674926 7961025 ~ 7969606 (-)
G79608 NA non-coding downstream 538982 6331954 ~ 6733860 (-)
G79625 NA non-coding downstream 653605 6611911 ~ 6619237 (-)
G79622 NA non-coding downstream 666768 6599346 ~ 6606074 (-)
G79621 NA non-coding downstream 705424 6565245 ~ 6567418 (-)
G79617 NA non-coding downstream 748535 6493541 ~ 6524307 (-)
G79791 NA non-coding upstream 231777 7517876 ~ 7518290 (-)
G79777 NA non-coding upstream 352343 7638442 ~ 7641186 (-)
G79792 NA non-coding upstream 391143 7677242 ~ 7741498 (-)
LOC122354606 NA non-coding upstream 415326 7701425 ~ 7703761 (-)
LOC122354607 NA non-coding upstream 425498 7711597 ~ 7713703 (-)
LOC122354641 svbp other downstream 117567 7153465 ~ 7155275 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other downstream 131606 7131578 ~ 7141236 (-)
vamp3 vamp3 other downstream 425052 6813625 ~ 6847790 (-)
G79565 NA other downstream 1176362 6096133 ~ 6096480 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other downstream 1507702 5739016 ~ 5765140 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other upstream 82273 7368372 ~ 7436471 (-)
snrpe snrpe other upstream 742507 8028606 ~ 8035551 (-)
G79947 LOC107694876,LOC107743257,LOC107579790,LOC107751196 other upstream 806301 8092400 ~ 8143620 (-)
G79967 NA other upstream 909719 8195818 ~ 8196385 (-)
LOC122354197 LOC107694863,LOC107582459,LOC107751197,LOC107697444,LOC107581824 other upstream 910373 8196472 ~ 8206841 (-)

Expression


Co-expression Network