c11h1orf50 (zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182)


Basic Information

Item Value
gene id c11h1orf50
gene name zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7290610 ~ 7294450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252922.1
ACTCGACGGACCCCAGAAACGCCTCCCTTGTGTTGTACAAGACTTTTTTGACACCGGTGAGAAGTCTCGTGTTAGTTTGCTAAACTATACGGGTATTTAATTATAGAATGGACAAAACTGTCAgtctaccacaacaactgaacAAAACCACCACGGtaaCCTTGGTGGAGACCAGTAGTAACCCAAGTGGAATGGCACTAGTAAGTCCCTACCAGACCAACCGGTTTGGGGATCCCATGGATCTAGTTGCTCTGGCACAGCAAGTACAGAAGGGAGATGAATTCGTCAGAGCCAATGCTTGCAACAAACTCACAGTGATTGCTGAGCAGATAAGATACCTTCAGGAGCAAGCAAGAAAGGTTTTGGAAGATGCCAAGAAAGATGCTGAGCTTCACCATGCTGCCTGCAATGTTGTGAAGAAACCAGGAAACATGTATTATCTTTATATGCGTGAATCCGGACAGCGCTACTTCTCCATTCTGTCTCCAAAGGAATGGGGTCCTAGTTGTCCTCACAAGTTCCTCGGTGGATACAAACTCCAACATGACATGTCTTGGACACCGCAAGAGGAAGTTGAAAAGCGCGATGTTGAAATTGGCATCATGGACAAACTGTTGAACAGACAAACTGCTCTTCCAGCCTGTACAGAGCCCAATTTTGAAGGTCTTTCACAGTGAAAGGTCATAGTTCACTCACGGACTGTCTTATCGGCTCATGGATGCAACATTATCTTAAAAGCTACTAATAGTTTATATACAagtaaactgaattaaaatcaGACTGGAATCTT
>XM_043252923.1
AACGCCTCCCTTGTGTTGTACAAGACTTTTTTGACACCGGTGAGAAGTCTCGTGTTAGTTTGCTAAACTATACGGGTATTTAATTATAGAATGGACAAAACTGTCAgtctaccacaacaactgaacAAAACCACCACGGcatCACGAATACTGATCACCTCTACAGGCGTTTACTTGAGAGCTTATTCAACATGTTACATAAGGCTTAGAAACTTCACCAAAtaaCCTTGGTGGAGACCAGTAGTAACCCAAGTGGAATGGCACTAGTAAGTCCCTACCAGACCAACCGGTTTGGGGATCCCATGGATCTAGTTGCTCTGGCACAGCAAGTACAGAAGGGAGATGAATTCGTCAGAGCCAATGCTTGCAACAAACTCACAGTGATTGCTGAGCAGATAAGATACCTTCAGGAGCAAGCAAGAAAGGTTTTGGAAGATGCCAAGAAAGATGCTGAGCTTCACCATGCTGCCTGCAATGTTGTGAAGAAACCAGGAAACATGTATTATCTTTATATGCGTGAATCCGGACAGCGCTACTTCTCCATTCTGTCTCCAAAGGAATGGGGTCCTAGTTGTCCTCACAAGTTCCTCGGTGGATACAAACTCCAACATGACATGTCTTGGACACCGCAAGAGGAAGTTGAAAAGCGCGATGTTGAAATTGGCATCATGGACAAACTGTTGAACAGACAAACTGCTCTTCCAGCCTGTACAGAGCCCAATTTTGAAGGTCTTTCACAGTGAAAGGTCATAGTTCACTCACGGACTGTCTTATCGGCTCATGGATGCAACATTATCTTAAAAGCTACTAATAGTTTATATACAagtaaactgaattaaaatcaGACTGGAATCTT

Function

symbol description
zgc:112255 Orthologous to human C1orf50 (chromosome 1 open reading frame 50).

NR:

description
PREDICTED: uncharacterized protein C1orf50 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252922.1 False 790 mRNA 0.44 5 7290610 7294450
XM_043252923.1 True 856 mRNA 0.43 6 7290610 7294433

Neighbor

gene id symbol gene type direction distance location
cdc42 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 4511 7272842 ~ 7286099 (-)
camta1b LOC107751174,LOC107654393,LOC107756644,LOC107654440,LOC107582404 coding downstream 169482 6848989 ~ 7121128 (-)
per3 per3,LOC107751173,LOC107756610,LOC107582444 coding downstream 451778 6818532 ~ 6838832 (-)
ccdc50b LOC107592910,LOC107756624,LOC107751234,LOC107654367,LOC107654434 coding downstream 1359126 5916996 ~ 5931484 (-)
si:dkey-264d12.5 LOC107592908,LOC107756646,LOC107654411,LOC107654359 coding downstream 1394395 5887765 ~ 5896215 (-)
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding upstream 194833 7489283 ~ 7495714 (-)
mfsd4aa mfsd4a,LOC107756626,LOC107654377,LOC107582392,LOC107751189 coding upstream 447795 7742245 ~ 7753814 (-)
cdk18 si:dkey-166c18.1,cdk18,LOC107654374,LOC107756627,LOC107698687,LOC108254840,LOC101468598 coding upstream 460076 7754526 ~ 7830238 (-)
si:ch211-112f3.4 LOC107582165,LOC107654372,LOC107743264,LOC107751241 coding upstream 666575 7961025 ~ 7969606 (-)
LOC122354498 sox13,LOC107580906,LOC107743263,LOC107751191,LOC107582435 coding upstream 699002 7993452 ~ 8019940 (-)
G79608 NA non-coding downstream 556750 6331954 ~ 6733860 (-)
G79625 NA non-coding downstream 671373 6611911 ~ 6619237 (-)
G79622 NA non-coding downstream 684536 6599346 ~ 6606074 (-)
G79621 NA non-coding downstream 723192 6565245 ~ 6567418 (-)
G79617 NA non-coding downstream 766303 6493541 ~ 6524307 (-)
G79791 NA non-coding upstream 223426 7517876 ~ 7518290 (-)
G79777 NA non-coding upstream 343992 7638442 ~ 7641186 (-)
G79792 NA non-coding upstream 382792 7677242 ~ 7741498 (-)
LOC122354606 NA non-coding upstream 406975 7701425 ~ 7703761 (-)
LOC122354607 NA non-coding upstream 417147 7711597 ~ 7713703 (-)
LOC122354641 svbp other downstream 135335 7153465 ~ 7155275 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other downstream 149374 7131578 ~ 7141236 (-)
vamp3 vamp3 other downstream 442820 6813625 ~ 6847790 (-)
G79565 NA other downstream 1194130 6096133 ~ 6096480 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other downstream 1525470 5739016 ~ 5765140 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other upstream 73922 7368372 ~ 7436471 (-)
snrpe snrpe other upstream 734156 8028606 ~ 8035551 (-)
G79947 LOC107694876,LOC107743257,LOC107579790,LOC107751196 other upstream 797950 8092400 ~ 8143620 (-)
G79967 NA other upstream 901368 8195818 ~ 8196385 (-)
LOC122354197 LOC107694863,LOC107582459,LOC107751197,LOC107697444,LOC107581824 other upstream 902022 8196472 ~ 8206841 (-)

Expression


Co-expression Network