lsg1 (lsg1,LOC107573872,LOC107677512,LOC107551801,LOC107685959)


Basic Information

Item Value
gene id lsg1
gene name lsg1,LOC107573872,LOC107677512,LOC107551801,LOC107685959
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 9644718 ~ 9649706 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252924.1
TGGTTTTCCGCGGACATTTTTAGTGAGACACTTGGGACAAACCAAAGGTTTAGAGAAGATTCGACTTTTAACCTTTTTCTCAGACAGTTCCACCAACATTTAAACTGTAAACACAAGCACTCTACTAAAATGAACGAACCAGAATCAAAATAACATTATGTTCGGCATCTAAACGGATTAAGGCCCTGAAGCAAAGGTTCCTCTCATAGACCACTCCGTGTGACTTCCTTCCTCTGCCATAACAAACATCTCACACGCGTGAAGTTGTGTCCACTCGGATGTCCACGAACAGATCGCTGACACATTTTAATGACTATTTTACCGTGTAAAAGTATATAAGATGGGAAAGAAGAAGACTCGTGGAGAAGGTTCAGGGTTGGGGAGAGCTTTATTAAAGGAGAGACTAAACGCAGGCCGTGGATACAGAAGAAATGACACATGGCTTCACACCAGTGAACTGAACGATGGATATGATTGGGGTCGACTCAACCTACAGTCTGTCACGGAGCAGAGCTCTATGGATGACTTTCTGGCCACAGCTGAACTTGCTGGAACTGAATTTGTTGCAGaGAAGCTGAACATAAAATTTGTCCCAGCTGAAGCGAGGGCTGGCTTGCTTTCTGCTGAGGAGTCCACACGATTAAAGAAGCTCCATGAGGAAAACAAACAGTTCTTACGAATTCCCCGGAGGCCTCTCTGGGACGAGAGCACAAGCCCCGAGGTTCTGCAGCAAAACGAGAGGGACAGTTTCCTTATATGGAGAAGAGAACTGGCTCGGTTGGAAGAGGAACAGAAGTTGATTCTTACCCCTTTTGAGAGGAATCTTGATTTCTGGAGGCAGCTTTGGAGAGTTATCGAGAGGAGTGATGTTGTGGTTCAAATCGTCGATGCCAGAAACCCGCTTCTCTTCCGCTGTCCAGATCTCgaaaaatatgtaaaagagGTCTCGGTTCATAAAGTGAACATGCTTCTGCTGAACAAAGCCGACCTCCTCACTAGAGAACAACGGCGAGCTTGGGCCCGATACTTCCAGAAAGAGGGCATCCGAGCGGCGTTCTGGTCTGCTTTGGCTGAGGCACAGCGACTTGAGGCCGAGGAGAAGGGAGAAGAGCCGATGGACCAAGAGGATCAGAGCGATACAGAACAGGAAGCAGCCTCCAAAAATGTCACAGATCTTCATGAGGATCCTAATCCTAatgaagaggaagatgaagaggaaggAAGAGTCTTTGTCGATGAGACAGAATGGCAGACGTGCTCTGAGGAATCCGGAGATGAAGATCACTCTGAGGAGAAACCGGAATCCACAGCCGTTTCATCTTTCTACAACTCCAGCCGTTTGTTACGCAAAAATGAGCTGCTGGAAATGTTTAAGGGTGTGCACTCTGGGCCGACATGCAAAGATGGACAAATCACAGTCGGACTGGTGGGATATCCTAATGTTGGAAAAAGCTCTACCATCAACACCATCCTGAGAAATAAGAAAGTCTCCGTTTCAGCAACACCTGGACACACAAAGCATTTTCAGACTCTGTTCGTTGATCCTGGTCTCTGCCTGTGTGATTGTCCCGGACTGGTCATGCCTTCTTTTGTGTCCACCAAAGCTGAGATGATTTGCAGCGGGATCCTACCCATCGATCAGATGAGAGATCATGTTCCAGCCGTCTCTTTGGTATGTCAGACTATCCCTCGATCTGTGCTGGAGGGGACCTACGGGATCAACATCATCAGACCAAGAGAGGACGAGGCCCCCGATCGCCCCCCCACCCACGAGGAGCTGCTCATGGCATATGGATATATGAGAGGTTTCATGACGGCACACGGCCAGCCAGACCAATCAAGATCAGCCCGTTACGTCTTGAAAGACTATGTGAATGGTAAACTGCTTTACTGCCACTCTCCACCCCACATCAACCCTAAAGACTTTCAGCCTCAGCATGCCAGGTTTACCAGACCGAGCGGAGGAGTCGGACAGATCAGCAGCGACGCCGGCAAACCATCGAAAGTCAAACGCATAGAGAACACAGTGGATAAACATTTCTTTCATCAGGAAAACGTGCAGGCGCTGACCAAGGGTGTGCAGATGGTGATGGGTTATAAGCCCGGAAGCGGTCCTGTTGGACCTGGAAGTGCAAACACAGAACAGACTGGTAAACCCTGGAAAAAACATGGCAACCGGAACAAGAAGGAGAAAGTGAGAAGACTCAATAAACATCTGGATGCATAATAATCCCTatactaagatttttttttttttgatcggATACTCTTTAATGCAAAGACTTTAATTTCACCATGTCTTATACCTGGATGGGATTAAAAAGTGCTGCTGGACATTCCCCTTTGTATGAAATGTCATCACTCATAATAATAAACGATCACTCTGTGTTTAATCAGTGTACTGGATGAAGAAAGTAATGGACACAGACAAACGCTAATAAATAAAGATCTCATCATGATGTCCTTAAAAGCACTTTTGTTATTTACTaaaattattgatttgatttattgaaTACGTGGTTGACTAACAAAGCTGACAATGATCATATATGAAGAGTTTTTCAGTGCAATTCTCTCTaaattctctctttctctctctaaagCCTTATGATTAGTACTGTGTTTTTGAGAGAGCATGAAATTGTATGGTAGTAATAGACAAACGTTACATTTTTAAGggaaatatttatgtaaatctATAAGATAGAACGTGTATATTTTGATGCGTAGATTTGTCATTAAATCGTGCAAGTTTCTTACTA

Function

symbol description
lsg1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in ribosomal subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in Cajal body and endoplasmic reticulum. Predicted to be active in cytosol. Is expressed in eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human LSG1 (large 60S subunit nuclear export GTPase 1).

NR:

description
large subunit GTPase 1 homolog

GO:

id name namespace
GO:0051168 nuclear export biological_process
GO:0015031 protein transport biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0015030 Cajal body cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14539 LSG1; large subunit GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252924.1 True 2762 mRNA 0.45 14 9644718 9649706

Neighbor

gene id symbol gene type direction distance location
xxylt1 xxylt1,LOC107677510,LOC107715806,LOC107718247,LOC107685961,LOC107581703 coding upstream 65363 9540559 ~ 9579355 (+)
pfkfb4a pfkfb4a,LOC107715804,LOC107574463,LOC107718206,LOC107685962,LOC107677511,LOC107551799 coding upstream 139290 9493639 ~ 9505428 (+)
mapkapk3 mapkapk3,LOC106525176,LOC107677509,LOC107574676,LOC107551779 coding upstream 153701 9475511 ~ 9491017 (+)
dnah1 dnah1 coding upstream 170496 9443818 ~ 9474222 (+)
LOC122353647 LOC107718244,LOC107715798,LOC107686009,LOC107575380,LOC107551786,LOC107677506 coding upstream 378019 9261940 ~ 9266699 (+)
tmem44 LOC107685958,LOC107718212,LOC107715772,LOC107551791 coding downstream 219 9649925 ~ 9658342 (+)
atp13a3 LOC107573662,LOC107715810,LOC107677501,LOC107685957,LOC107551802,LOC107718210 coding downstream 10855 9660561 ~ 9694243 (+)
tdo2b tdo2b,tdo2,LOC107718213,LOC107715811,LOC107551803,LOC107685956,LOC107573507 coding downstream 46569 9696275 ~ 9700230 (+)
col6a1 col6a1,LOC107715812,LOC107677507,LOC107685955,LOC107718214,LOC107551781 coding downstream 60559 9710265 ~ 9740138 (+)
col6a2 col6a2,LOC107573124,LOC107715814,LOC107677497,LOC107685953,LOC107718216 coding downstream 101171 9750877 ~ 9764694 (+)
G80347 NA non-coding upstream 50907 9593255 ~ 9593811 (+)
G80346 NA non-coding upstream 52506 9591978 ~ 9592212 (+)
G80344 NA non-coding upstream 57257 9587200 ~ 9587461 (+)
G80343 NA non-coding upstream 58266 9586210 ~ 9586452 (+)
G80341 NA non-coding upstream 61531 9582750 ~ 9583187 (+)
G80523 NA non-coding downstream 435648 10085354 ~ 10091837 (+)
G80531 dennd4a,LOC107596978 non-coding downstream 590139 10239845 ~ 10243421 (+)
G80525 NA non-coding downstream 594162 10243868 ~ 10244071 (+)
G80509 NA non-coding downstream 671964 10321670 ~ 10322338 (+)
G80511 NA non-coding downstream 675944 10325650 ~ 10331888 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 104597 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 219416 9422950 ~ 9425302 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 665477 8891450 ~ 8979241 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other upstream 763062 8879583 ~ 8881656 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 765730 8875288 ~ 8878988 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 816916 10466622 ~ 10471187 (+)
G80638 NA other downstream 991426 10641132 ~ 10661970 (+)
G80761 NA other downstream 1572641 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 1855947 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 1875317 11525023 ~ 11527042 (+)

Expression


Co-expression Network