plvapb (plvap,LOC107680480,LOC107747760,LOC107597160,LOC107685179,LOC107757946)


Basic Information

Item Value
gene id plvapb
gene name plvap,LOC107680480,LOC107747760,LOC107597160,LOC107685179,LOC107757946
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13302345 ~ 13307142 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252928.1
TAATACCCAAAACCCTGTTAGCAGGAGGTCTTGCCTGGTACCCAAAAAACACAGTCTTCTTTTGGCCAAGAAGCGGACCGAGGAAAAAGCCAATGAAGAGCAGAAGCAGGAGACAAAGTGCAAGTATTGCTTCAAAGCGACGTCCCATAAACCTTGGGTTTCCATAAACATTCCCTTGTATCTCTCACTCATAAAGACTAAAcaacaatataatgtaatgaaTATAATGCAATATGCATGAATAATAAGTcgatgaaatgaatgaaaaagatTATGATTAGATggaataacaaaaatgattaagTAGTAAATGATTAAGTgaatgaatggaaaagaaagcaAGTAAAACACGCACAGGCACACTTCAGATCCTCCAGCGTGAAGTACCGATGACCTCTGGAGCTTTCCTGGGGAGGGTCCGGAAAAAGTCACGGCATGGGAAGCGTGTGTTATAAACACAGCTCCCGCCCCGAGTCCTGACAGAAGTGTTTACATGTCACTGGCCGCGAGAGTAACCTCTGACCATCGTTCCTCCAGTCTCACAAGCATCTGAAGGGCTCCCTCAGAAATGTACAACAGCAGCTACTCCCGGGCCACTCTCGGACTGGAGACCAAACCCATCCACAAGGCGAAGAAGGGGAAGAGCTGCGGCTACTACATGAGGATCGTCTTCTTCTTCTCGTCTCTGATCCAGTCCCTCATCATCGCCAGTTTGGTGCTCTTCCTCGTGTACGGGCAGCCGGAGAAGACGGCCGAGGAGAAGAGGGTGGAAGAGCTGGAGCTGGCCTTCAACAAGCTCTCCTCGGACAACGCCAAGCTCAGGAAAGACAAAGCCGACCTCACCGGAGCCCTCAAGGCGAAGACCGGAGAGAAGGAGGCGGCGGATAAAGAGATCGCAAAGCTGAAAAGTGACCTGAACGCAACGAACATCAAGAGCAGTAACTTGCAGAAGTCCcttACTCTTTGTGAGACCAACAAAGCGAAGATTTCAAGCACTCGATACACTCCGCTCCCATGTCCGCCAACCAACAACAATCAGAATGGTGAAATAAAAACTCTTAATACTCTTCTGGAACAGCAGAAAGTTCTATATGGAATCCTTAAGAGTAACTTCAGCCAAACGGTGGAGTACCTCAAAGCTGACTTGGACAACGCAGTGAAGGATAAAAATGAACACCACGGCCAGGTGATACAACTCAGACAAGAAAACATGGACTTCAAATCCCAGCTTGATGTGTACACCAAGAAATGCAAAGAAGACTTTGCAGACTCTCTCCAAGGCATCCAGACGGTCACGAGCGCCTTCCTGACCAAAATCGACAACTTCTTCACCAACTCGGTCACGTTTCACCTCACCTGCCCGAAACAGGAAGAACAGATGGAAAGGATTCGCTCCAACTGCTCCAGCCTCTCTCGACAGGTGGAGGACAAGTTCCAGAGCTACCTGGACAACGTGGGAGCAAAGGTCTCCAGCATTCAAAAGCAGAGCAGCCGGCTGGAAGTACAGAACACGGGACTGACCTCAGAGCTGGACAAGTGCAAGACGGACCGGGAGAAGGAGGCTACGGAGAGCAGCAAAAAGCTGCAGGACACCCAACAGAAGTATGACAAGCAGCTGGAGCAGCTTCTCAAGGAGCAAAGCAGGCTCAGGGACGCCAAAGACCTGCTAGAAGCCCGTCTTTCTGTGAATGACGCCACCCTTATATCCCTGCGAAACGGCTGCACACAACAGCCCAAACCTGCTGGCGTACCCATACCTGGTCGGGGCCATTAACCACTGAAGGCTGGGTGTGGAGAAGGGAATGATCTGAATCTCAAGGCCGGACTCTGACTTTCTGAGTGTCTTGTGTGCGGGAGTTTCCTGATTTTGAGCCTGTGATCTCTTTTGTGAATAACGTTGTCGCCGTGGATCACTGTAAATGTACGTGCACCGTTTAGTTCATTGTATAGTTGTATTTAAGCACGATGTACTTCTGAATCAGTTATTCAGACCTAAAAATGTGAGGCCGCCTTTATACGAAGCGGTTAAATACATATTAGATACATTTATTAACAGCATCAGTTGTTAAATACTGAAAGAATCTGATTCTGTGAAATCTCCATGTGTTGTGATGTATATAATAACCTTTACACATTAGTTGTGTTGCAGTTTTAATGtcctttttactgtttttgttttctgaatattttgtcCTGTTTAATATGTTGATCAGTctgttgtaaataaattaattgtca

Function

symbol description
plvap Predicted to enable identical protein binding activity. Involved in MAPK cascade; positive regulation of cellular extravasation; and tumor necrosis factor-mediated signaling pathway. Located in cell surface. Colocalizes with caveola. Implicated in congenital diarrhea.

NR:

description
plasmalemma vesicle-associated protein

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252928.1 True 2238 mRNA 0.47 5 13302345 13307142

Neighbor

gene id symbol gene type direction distance location
ano8b ano8,ano8b,LOC107685197,LOC107680545,LOC107597162,LOC107747324 coding downstream 14429 13266834 ~ 13287916 (-)
dda1 dda1,LOC107685208,LOC105913185 coding downstream 37412 13261384 ~ 13264933 (-)
abhd8b abhd8b,abhd8,LOC107747334,LOC107578087,LOC107680465 coding downstream 41103 13256637 ~ 13261242 (-)
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107680536,LOC107553529,LOC107757934 coding downstream 71202 13227645 ~ 13231143 (-)
LOC122353867 sult6b1,LOC107680496,LOC107552400,LOC107744587,LOC107713000,LOC107557424,LOC107657965 coding downstream 302219 12995247 ~ 13000126 (-)
babam1 babam1,LOC107747315,LOC107680561,LOC107685168 coding upstream 3180 13310322 ~ 13315638 (-)
nrtn nrtn,LOC107597152,LOC107680454,LOC107747182,LOC107685306,LOC107757927 coding upstream 119112 13426254 ~ 13442667 (-)
ndufa11 ndufa11,LOC107747164,LOC107680555,LOC107685299,LOC107553555,LOC107757926,LOC107597150 coding upstream 150052 13457194 ~ 13459276 (-)
LOC122353919 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 221790 13528932 ~ 13530398 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 290247 13597389 ~ 13598903 (-)
G81611 NA non-coding downstream 56072 13233801 ~ 13246273 (-)
G81608 NA non-coding downstream 77484 13222525 ~ 13224861 (-)
G81605 NA non-coding downstream 81681 13218964 ~ 13220664 (-)
G81578 LOC107747780 non-coding downstream 141035 13160173 ~ 13161310 (-)
G81540 NA non-coding downstream 254195 13047571 ~ 13048150 (-)
G81619 ushbp1,LOC107680560,LOC107747291,LOC107597197 non-coding upstream 13024 13320166 ~ 13322021 (-)
G81621 ushbp1,LOC107680560,LOC107747291 non-coding upstream 16537 13323679 ~ 13325131 (-)
G81624 NA non-coding upstream 22262 13329404 ~ 13330007 (-)
G81643 NA non-coding upstream 82589 13389731 ~ 13390119 (-)
G81657 LOC107757942 non-coding upstream 153332 13460474 ~ 13701441 (-)
G81512 NA other downstream 244464 12817753 ~ 13057881 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other downstream 312388 12984373 ~ 12989957 (-)
LOC122353859 NA other downstream 336712 12956861 ~ 12965633 (-)
G81523 NA other downstream 406215 12890281 ~ 12896130 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other downstream 634757 12663831 ~ 12667588 (-)
ccl25b LOC107680477 other upstream 42794 13349936 ~ 13394008 (-)
ccl44 ccl44,LOC107597158,LOC107685327,LOC107553533 other upstream 59425 13366567 ~ 13369997 (-)
G81663 NA other upstream 265589 13572731 ~ 13593554 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other upstream 299130 13606272 ~ 13609604 (-)
G81650 NA other upstream 390957 13698099 ~ 13699958 (-)

Expression


Co-expression Network