LOC122354663 (LOC107753811,LOC107656084,LOC107593146)


Basic Information

Item Value
gene id LOC122354663
gene name LOC107753811,LOC107656084,LOC107593146
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 16554408 ~ 16555675 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252937.1
ccagtgaaagGTTGAGATGTGTTGTTTTAAACAGCTAGAGGGATCATGATGTTTGCCTGCGTCCCCATGCCGACCCTGAGAGCCATGCTGTCCAAGGATCTGCATCCCCAGCAGTATGGGCGAGTCTTTGGGATGCTCCAGCTGCTTCTGGCTGTGACCGATCTCTTGTCTAACGTCTTTTTCACCTCCGTTTACCCGCTAACTCTCGGCTGGTTCAGCGGCTTCTGCTTCCTCCTCTCCTGTGCTGTTAGTTACATCAGCGCTGTCCCGATCATtTATCGAAATGGCAGAGACACGCGTCTCGGATCCATTTGAAACGTTGACCTACAGGAAAAGGTGTCTGTTCTCGTTTTGATTCAGCACTATGGAGCGTGATGGAAAAATAATAGGATTCATGCAAGCAATGCTTCCGCATTCTTCCCCAAAAAGCATTGCATTACCTGATGAACTTTGCATTtgataagaaaaaatgtttctgtactCTCGCAAAAATAAGGCATGCACAGCAAAAATCGCAATGctttttaactacattttcaCGTCCCCTCGCAAACgttataaaatgtctaattcTAATTCAATTTAGTTCACCAATTTATTTCCCCTGCAAAAGCACTGCAATAGCTTTCCTCCCGCGTTATGCTATTTCCAAACTAGTTTTGGCTGCAAGCAAAACAGAAAGCTTTTGCAAATGAATTTGAAAGTttagcaaaaaatgaaaaagatgttGCAGGCAAAAGCACAGTTTCTCAGGGTGTcgttaaagcattttttttctcccatgaCTACGGGCTCTGTGCATTTCTCTTAGTAATAACATTTGATTGCAGTAATATACTGTGCGATGCATAATTGAATGTCGAAGAACTGGAGAACTAAAACGAGTATGATACAAAAGTCTGCCCAGCTTTCTTGCAAAACACAAGATAAGGTAAAATAGGTGGAAATATTTAAgtctaaatacaaaatactattAGCATTTTAGGACTGTTTTTCATGTTGGAACATATGGTTTATTAATAGTACAGTAAATACTATGTTTCTTCTCTGTATAATTGTCAATAAATCTCC

Function

NR:

description
PREDICTED: thymic stromal cotransporter homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252937.1 True 1071 mRNA 0.40 3 16554408 16555675

Neighbor

gene id symbol gene type direction distance location
tbl1xr1a tbl1xr1,LOC107600277,LOC107718892,LOC106584305,LOC107557783 coding downstream 81441 16431654 ~ 16472967 (-)
LOC122353772 spata16,LOC107593153 coding downstream 604818 15842161 ~ 15949590 (-)
b3gnt5a b3gnt5a,LOC107593139,LOC107656073,LOC107753797,LOC107674530,LOC107718888,LOC107563744 coding downstream 772719 15776187 ~ 15781689 (-)
LOC122353685 NA coding downstream 906063 15646561 ~ 15648345 (-)
LOC122353771 NA coding downstream 923140 15630130 ~ 15631268 (-)
LOC122354689 kcnmb2,LOC107600278,LOC107656067,LOC107699784 coding upstream 99457 16655132 ~ 16660615 (-)
LOC122354367 LOC103358720 coding upstream 210698 16766373 ~ 16769063 (-)
LOC122353589 LOC103358720 coding upstream 333915 16889590 ~ 16891932 (-)
lrig1 lrig1,LOC107753782,LOC107716980,LOC107557776,LOC107600281 coding upstream 403228 16958903 ~ 16992270 (-)
suclg2 suclg2,LOC107753779,LOC107729402,LOC107699794,LOC107656059 coding upstream 540646 17096321 ~ 17184119 (-)
LOC122354516 NA non-coding downstream 50974 16499216 ~ 16503434 (-)
G82389 NA non-coding downstream 109177 16427798 ~ 16445231 (-)
G82378 NA non-coding downstream 208688 16341847 ~ 16345720 (-)
G82381 NA non-coding downstream 214303 16339857 ~ 16340105 (-)
G82376 NA non-coding downstream 218794 16335393 ~ 16335614 (-)
G82437 NA non-coding upstream 32719 16588394 ~ 16588760 (-)
G82445 NA non-coding upstream 51124 16606799 ~ 16609708 (-)
G82447 NA non-coding upstream 54890 16610565 ~ 16648554 (-)
G82496 NA non-coding upstream 442986 16998661 ~ 16998866 (-)
G82578 NA non-coding upstream 891484 17447159 ~ 17447681 (-)
LOC122354045 NA other downstream 939471 15595565 ~ 15614937 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other downstream 977343 15552356 ~ 15577065 (-)
LOC122354564 NA other downstream 1152717 15400918 ~ 15401691 (-)
LOC122354561 NA other downstream 1318972 15233933 ~ 15235436 (-)
G82067 NA other downstream 1340350 15204961 ~ 15214058 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other upstream 35131 16590806 ~ 16593930 (-)
LOC122353776 NA other upstream 48329 16604004 ~ 16606580 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other upstream 223237 16778912 ~ 16912574 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other upstream 981828 17537503 ~ 17540171 (-)
G82588 phf2,LOC107556181,LOC107685641 other upstream 994906 17550581 ~ 17559836 (-)

Expression


Co-expression Network