klhdc8a (klhdc8a,LOC107743283,LOC107654360,LOC107581204,LOC107700004,LOC107582463)


Basic Information

Item Value
gene id klhdc8a
gene name klhdc8a,LOC107743283,LOC107654360,LOC107581204,LOC107700004,LOC107582463
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7905286 ~ 7923424 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252962.1
AACACAGACCCCAAGACACACGACTCCCGCAACTTTTTCATTTCCTCACGGGGAGCGTCATTTGCGTAGACGTTACAACGAGATGGACTTATGTAGGTTATCAGACGCACTGGGGCCCCCTTGAGCATTTCTGAAATTAATGTCAGAATGACGAATATGATGAAGGGCTCGCGATGAATATTTCATGTATGACCCATATGAGGGAacgggagagggagagagcagCAGAGATGCTGAGACGCTGAGCGGGCTTCGGCGGAGCCTGAGCTGAGCTGCGGCTGAGAGGGAGGGAGGGTCCATTCCACGCGTGGATTATTGTTGCTCTGCATCGCGCTCTATCCATAAGGGAAGCGGCCGAGGAGAATCGGAAGAAACCGAAGCCCAGACCGAAAAGAGCTGCGTGAGGAAGCAAAGCGATCGGTCGGGGTGATGACGCTGCCCTCGGCCCATGAGTTTCACTGGCAGAGCCTGGCGAGTCTTTCCAGCGCCCGCGTCTATCACTCACTAGCCGACGTCGGGGGACAGCTGTATATGGTGGGGGGTTGCGACGCTTCGGGTCGACCCACCAGCGCTCTGGAGCTCTACTCCCCTGAGGTGGACCGCTGGCTCGGTCTCCCTCCGATGCCCACGCCGAGAGCCGGGGCGGCCGTGGCTGTGTTGGGTAAGCAGCTGCTCGTGGTTGGGGGAATGGGGAAGGACCAGCGCCCCCTGAAGGCTGTGGAGGTGTATAACACCGAAGAAGGCAAATGGAGGAAGAGGTGCTCGCTCAGAGAGGCGTCCATGGGCCTGTCTGTCACTGTTaaagACGGCAGAGCTCTCGCTGTTGGGGGAATGGGAGCAGACCTCCTGCCTAGAAGTGTTCTCCAGCAGTATGACCTTCGCAAGGACGTGTGGGCGCTCCTTCCGCCCATGCCCACCCCTCGCTACGATACCAGCATCTGCCTACTGGCCTCCAAGATCTACGTGGCAGGAGGACGTCAGTGTAAGCGTTTGGTGAAGGCGTTTGAGGTCTTCGACATGGAAAGCCGTACCTGGTCCTCTCTACCCAGCCTGCCTTGTAAGAGATCTTATTCTGGGGTCTTATGGGACAGCGCCGGGCGTCTTTGCTGGTTGGGAGGGCTCAGACAAGGAGGAATACACCAAAGTTCAAAGTTTACCAAGAATGTTAACATCTTTGACACCAACCAAGGAACTTGGTTGAAATCGGAGGACACCGTACCCTTGAAAACCAAGCGAGCAGACTTTGCCGCAGCCATAGTGCGAGGCAGAATGATCGTGGCGGGAGGCCTAGGCCATCAGCCATCAGTGCTGGACACCGTTGAAGCATTTCATCccgaaaaaagaaaatgggaaAGGCTGTCGCCCATGTCGACGCCGCGTTGCTCTGCCTCCAGCATTGTTATCCGTGATCGCCTACTGGTAGTAGGAGGTGTCAATCAAGTCCCAAGCTCCGCCCATGAGATTCTTTATATAAAGGAGGAGGAGATTCTTTAACCACAGAACGTTAGGTTTACACATCAGAAAAAGTTGCCTTCGATGATCAAGTCCATTTTTCACGGTGACGTTTACTGTCGCTTGGCAAAATTTTGCATCAAAATCCAGTCTGTGCATTCGGGAGTATCGCTTTCGCTCGTGttcagtgtgattttttttgcaaattcacTATGATGAACAATAGAAATCTGCTACTTCGTAAGCTGCGAGTTGGGGTTTTTCACCGATTTTGCACGTTCGAATTGGTTTGATAAATTTGCCAAACTAACCTACTATAAACTGCTGGGCTCATGTAGcgaatttggtaacactttaaaataaagttccttagttaacattggttaacaacaataataaacatgaaCTGAGAACTAACAATACTTCTacatcatttatacatttttaggtgatgttaatttcagcttttactaatgcattattaaaatcccaagtttttttaacattaatgcgCCGTGAACTAACACGAATAATCAAAGAACAACcgtattttcattaactaacattaacaaagatgaataaatagtgtaataaatgctgtttgtttgcatgtttgttcatgtgaattaatactttaatgttaacaaatgacacgttattgtaaagtgttaccgcaAATTTTCATAACCGACTTTAACACTAGCTAAAACTGCTTCGGGAAGTTAACCAATCAGCTTCCTCTCGGTCAGCTCGGCAAACTCACATGACCAACTTCTCGGCGCTGGGAACTTTTTTTGCCCTCATGCGAATTTCTCAATCACGTGGAATAGATTTCGACCGCAAAATTTTGCTAATGCGACCGCACTTTAAAGCCTGAAATATACTCTACTCAAATACTCAAATGTGAATCTTGCGATGCACTGCAAATGCAATAGGCGAGGATGTAGAGTTTCCTTCAAacgtttgttttaaattcaattcaggTAGCTAGCTACAAATATGTCagcagtttaaatgtaaaacatcatttttgctAGCCCTAGCACATGATTCCCTTCGAACTGTTGCTCCGCCATGACAGTAGTTTAgctgaaacagaaaaatgacTGTAGAGGATGTTTACACTGATGCCTACTATAGCGCTCCTTGTGGCATTGCTGACATATTTCATATGCCAATGCATGAAATCAAACTAGAGTTGGTGTTTATGTACTTATGTAGAGTATGTTTTGGGCTTGTTATCAGCACAACAAGGTTCTTGAATGCTAGACTGTTCAAACAAATAAGCTGCACTATGTGACAAGGAATAACTAAAGCACATTGTAGGAAACGACATGTATTTTAGTTCCACAAAGCTCACCGGTAATTCCATTATTACAAACTGCACAGCAACGACAATCTGCCTTTTAAAGCCAACAGCACCAAACACCTACTGAATGATCTAAGCCAACAAcatatgcacaaacacacctTCAGAGACACAATAAATCAGtgtttgaaaaagaaacagatttaGCAGTCTCCCTATAACAGTGTCTTGAGATATTTTTAGGGTGTTTACAGGGTGGCTATTTAATCTACTGCTATTTTTAGCATGATCATTTAGTAATACAGCAGAGGTCTTATTAATAAAGTGAAGTCTTAACTTTAGGGTGTTATTTGTGAATACTGTACCTCACTGCATTTGTTGTGTAGGAGGCGTTATGTGAACAGATTTTGGTGGTTCGTATGATTAATATGGTTATTTTTCACTCATTCTGGTCAGTTTCATCCTTGTCAAAGGTAACTTGCACTGCTGTAGCACACACATGCAAtccttttttctaaatatttacagGGTGATCAGCAATTTACGGTAGCATCGAGTACTTTGTCTTTAAAAACCTGTTGAAATCAAAAATAGGGAGTtttgtaaccaaaaaaaaaactgaaaaaagactTTCCAAACCTTTTCAAACGTCCTGCACCAACAGGACCAAAAGAAACTCCGGTCTACATAGGATTTCATTGGGTTTTTAATACTACTCAAGATATTGAGTGTGTTTACATGCTTGACAATTCCGGCTACGCAAGTAACGTTTACACGAGTTTTGAAATTATTGGTTTGGGTGCAAgtatgcacacacaaaatacaccACCAGGATTGTGGCTTAAACAGTTCATGACTTTCAACTGGTAAAAGAAAaccatttgcatttacattaccATGCTTGCTGCTGGGTGATTAAGCATAATAAGCGTAAGACTGTGCAAGTAAACACACTCATTGTCAGCACAAGGTTCAGAGATGCAGTATTTTGAATcgggaaaaaaaagttgaaaagcCTTTAGGGGAGTCATCATAGCTGTGGCCAATATCATTAAATgatgtttacttttttctatTATGATGTTTTCACTTAGCCATTTGCTCTAATTTTGTTAGAATAATGTGTCTTGGATGCACATAGCAATAAAATGAAGCACTGTAATATATGGTTTTCTACAATGCTTGTACATTTGTGGTTTTGCCATTAAATGAACTTTGTCTCCTGC

Function

symbol description
klhdc8a Orthologous to human KLHDC8A (kelch domain containing 8A).

NR:

description
PREDICTED: kelch domain-containing protein 8A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252962.1 True 3987 mRNA 0.44 6 7905286 7923424

Neighbor

gene id symbol gene type direction distance location
si:ch211-117k10.3 si:ch211-117k10.3,LOC107654380,LOC107573302,LOC107654420,LOC107751187,LOC107582464 coding upstream 179186 7719956 ~ 7726100 (+)
LOC122354605 LOC107756631,LOC107654376,LOC107751186,LOC107654419,LOC107582394 coding upstream 186709 7713238 ~ 7718577 (+)
LOC122354656 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448,LOC107751217 coding upstream 426905 7460992 ~ 7478381 (+)
cldn19 cldn19,LOC107582397,LOC107751184,LOC107565733,LOC107654447 coding upstream 578049 7316449 ~ 7327237 (+)
p3h1 p3h1,LOC107756620,LOC107751183,LOC107654416,LOC107582441 coding upstream 602126 7295280 ~ 7303160 (+)
slc41a1 slc41a1,LOC107654373,LOC107698497,LOC107751220,LOC108254937 coding downstream 9181 7932605 ~ 7957674 (+)
etnk2 etnk2,LOC107694884,LOC107751192,LOC107698335,LOC107582391,LOC106565623,LOC106583121 coding downstream 55722 7979146 ~ 7990954 (+)
yod1 yod1,LOC107580473,LOC107743281,LOC107699783,LOC107582461,LOC107694882,LOC107751243 coding downstream 112443 8035867 ~ 8040626 (+)
zgc:158258 LOC107743280,LOC107694864,LOC107580189 coding downstream 118914 8042338 ~ 8046954 (+)
erc2 erc2,LOC107694874,LOC107699320,LOC107582387 coding downstream 230508 8153932 ~ 8201269 (+)
G79813 NA non-coding upstream 24888 7873789 ~ 7880398 (+)
G79748 NA non-coding upstream 74975 7829953 ~ 7830311 (+)
LOC122354645 NA non-coding upstream 407097 7486210 ~ 7498189 (+)
G79706 epha8,LOC107654448,LOC107751217,LOC107582396,LOC107654383,LOC107565732 non-coding upstream 529612 7372912 ~ 7375674 (+)
G79707 NA non-coding upstream 532913 7349535 ~ 7372373 (+)
G79863 LOC107751197,LOC107697444,LOC107582459,LOC107694863,LOC102793523,LOC103359687 non-coding downstream 278299 8201723 ~ 8202344 (+)
G79864 NA non-coding downstream 281082 8204506 ~ 8204923 (+)
G79865 NA non-coding downstream 281573 8204997 ~ 8205706 (+)
G79868 NA non-coding downstream 287455 8210879 ~ 8211520 (+)
G79869 NA non-coding downstream 288246 8211670 ~ 8216411 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 163845 7727787 ~ 7741441 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 1080741 6818545 ~ 6824545 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other upstream 2558454 5286439 ~ 5346832 (+)
samd13 samd13,LOC107592550 other upstream 3521307 4375839 ~ 4383979 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other upstream 3529898 4368425 ~ 4375388 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other downstream 151995 8075419 ~ 8150569 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other downstream 357391 8280815 ~ 8282901 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other downstream 678763 8602187 ~ 8604284 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 894966 8818390 ~ 8819279 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 951864 8875288 ~ 8878988 (+)

Expression


Co-expression Network