si:ch211-112f3.4 (LOC107582165,LOC107654372,LOC107743264,LOC107751241)


Basic Information

Item Value
gene id si:ch211-112f3.4
gene name LOC107582165,LOC107654372,LOC107743264,LOC107751241
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7961025 ~ 7969606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252965.1
CAAAGGGTGGAGTGGGTCTTTTGAAGACGCACACAACCACAATCCCTGAAGGAAGAGGTTGAGCAAAAAGGATTTAAAGTCAACAGTGCGTTTGGAATAAAGTTAATAATTAGGTTAAATTAACCGGGCTACAAAAACGCCACTGTAATGTAACGTGTTACTTTTTATTCTCCTATCTGTCATGCAGGTTTCGCGGATCCGCGCGGCGCGTAAAAGCGAGTGGCTCACATGCGCCCTGACGCACCACTTCAGCCCAGATCCCTGCGTGGAAAACGAGATCGTGGTTCTGGCCACCGGCGTGGACCAGTACCTCCAGGAGGTGTTTCATCACCTCGCCTTTTACCACGGCGATGACCTGGTCTCGGGCGAGGACTTTAGGAGTCTGTGTTTGATTTTGGGGATCCCCGAGAGCGCGGAGACCGAGAGCGCCACTTCTGAGCACCGGGATGTTTGCCACGGACTTCCTCTCGCGCTGAACTTTAAAGATTTCCACGCGCGGATCTGTGGGTTTTTCTCGCTAAAGGCGCAGGAAGGGCAGACGGGAGTTCGACTTCCGGTCAGCGAGGAGACCGAGCACGTTGAGAGGGAGATCAGGCTCCGGTGTCCCCGCGTCCGGAGGAGAAAGTGCGTCAGTTTTGACCTGTCTGCCGAGCAACAGAACCGGGGGAGGTCGGCGAGGAGGTCCTCTCAGAATCCGGATCATTTACAGAGCTCTGCTGTGGAGCCCAAGAGAAACGCAGTGGATATTAACCCTCAGAGGAGATGGCAGGACCAGCTGGAGCTGGAGAACGCCAGTCTGAGGGAGCTGGTGGAGGACTTGCGTTCATCTCTCCAGAGCAGCGACGCACGATGTCTGGCGCTGGAGGTGGCCTTACGCCGGAAACACGTGCCATCATCCCAACACGCTGCAGGAGGAACCTCTGAAAAACAGCACTGCAAGACAAAAACACGACGATCCAAACCCACGGAATGTGACTCCAGAAGAAGCACCAAAGACCTCCTGCGAGAGCTGGAGCTGATCCGCGCTTCTCGCGACGGACAGCTGGAGGAAGCCATGAGGTTTAACCAGAGGCTAGAGGAAGAGCTGATGGCGGCTTACGGAGAGATTAGCAGGATGAAGGAGACGCTGGACAGCGTCCGGACCGAAAACACGCGGATTAAGAAGAGGACGGAAGAGGTCAGAGAGTCGCTGGCCGCGGGGCTGCAGGGCGTGAGGACATTACAAGACCAGGCTCGACAAGCTGACCGGCTCCGAGAACAAGTCCAGAGTCTGGAGAGGTTCAGGGCCCAGTGCACCTGCACAGAGCTGAACATGATCAAGACCGAAATACTAACCGAACCATGTGGGTCTGGGTTTTCCTCCCCCATCAGTCATGATGAGGCCAGAAGAGAAGAAGACCTGCAGAGGTCAGTAGAGGGTCGGGCAGCAtcagatgaggaagaggaggagatgaGCGTGGATGAAGGACAGTGCTGCCATCTGGAGGTGAAACGACTGATCAACAGATTACACAGCTGTTCTAAAGGGTGTCAGAAAGCTGCTATCTGCGATTGGCTCGTCTCTCAGAGCTCAGCTCATAGCAAAGACAGGGAAACACGTGTGTGCATTCCTCAAGCCAACGAGGGGGGAATCCAAGCGGGAAAGATGGAGCAGAAAGAGGTGGAGAGTGTGAGGGTTTATCATTCACTGCTGGAGGAGAGGCTCACGTTACTGCTGCAGATACCACACAAAAGAGTGTCTCGCAGGATCCTGGGGAAAATACTGGTCAACACGCTTGATCTGTGCGCTACAAAAAGCCACGACTGCACTCCGGTGATCCTGGTGGTGGACACACTGTGCCGCCAGCTCCTCTCCAGTGACCTCCTGGACGGAGGAGAGGAAGTGAGCGCTGGGTCACGACCTTCCGGGACCTCAGGTCACCCAAACACATCCAACCCCCTTCTGATGTCCTGCTGAGATATCACAGATgtcccactttaaacactttacGTGAGGGTACAGATCGGTGTTCTGTTATTTCTTTTGCCTTTAAAGACGTCAAGTATTGCTTGATAATACTTAATGTTATGTTGTATAagttattgtaataaatattaatgtattaattattatattcattaaaagcatacatttttatctcacaattctatttttctcatcattttgagatataaactttcgattata
>XM_043252966.1
CAAAGGGTGGAGTGGGTCTTTTGAAGACGCACACAACCACAATCCCTGAAGGAAGAGGTTGAGCAAAAAGGATTTAAAGTCAACAGTGCGTTTGGAATAAAGTTAATAATTAGGTTAAATTAACCGGGCTACAAAAACGCCACTGTAATGTAACGTGTTACTTTTTATTCTCCTATCTGTCATGCAGGTTTCGCGGATCCGCGCGGCGCGTAAAAGCGAGTGGCTCACATGCGCCCTGACGCACCACTTCAGCCCAGATCCCTGCGTGGAAAACGAGATCGTGGTTCTGGCCACCGGCGTGGACCAGTACCTCCAGGAGGTGTTTCATCACCTCGCCTTTTACCACGGCGATGACCTGGTCTCGGGCGAGGACTTTAGGAGTCTGTGTTTGATTTTGGGGATCCCCGAGAGCGCGGAGACCGAGAGCGCCACTTCTGAGCACCGGGATGTTTGCCACGGACTTCCTCTCGCGCTGAACTTTAAAGATTTCCACGCGCGGATCTGTGGGTTTTTCTCGCTAAAGGCGCAGGAAGGGCAGACGGGAGTTCGACTTCCGGTCAGCGAGGAGACCGAGCACGTTGAGAGGGAGATCAGGCTCCGGTGTCCCCGCGTCCGGAGGAGAAAGTGCGTCAGTTTTGACCTGTCTGCCGAGCAACAGAACCGGGGGAGGTCGGCGAGGAGGTCCTCTCAGAATCCGGATCATTTACAGAGCTCTGCTGTGGAGCCCAAGAGAAACGCAGTGGATATTAACCCTCAGAGGAGATGGCAGGACCAGCTGGAGCTGGAGAACGCCAGTCTGAGGGAGCTGGTGGAGGACTTGCGTTCATCTCTCCAGAGCAGCGACGCACGATGTCTGGCGCTGGAGGTGGCCTTACGCCGGAAACACGTGCCATCATCCCAACACGCTGCAGGAGGAACCTCTGAAAAACAGCACTGCAAGACAAAAACACGACGATCCAAACCCACGGAATGTGACTCCAGAAGAAGCACCAAAGACCTCCTGCGAGAGCTGGAGCTGATCCGCGCTTCTCGCGACGGACAGCTGGAGGAAGCCATGAGGTTTAACCAGAGGCTAGAGGAAGAGCTGATGGCGGCTTACGGAGAGATTAGCAGGATGAAGGAGACGCTGGACAGCGTCCGGACCGAAAACACGCGGATTAAGAAGAGGACGGAAGAGGTCAGAGAGTCGCTGGCCGCGGGGCTGCAGGGCGTGAGGACATTACAAGACCAGGCTCGACAAGCTGACCGGCTCCGAGAACAAGTCCAGAGTCTGGAGAGGTTCAGGGCCCAGTGCACCTGCACAGAGCTGAACATGATCAAGACCGAAATACTAACCGAACCATGTGGGTCTGGGTTTTCCTCCCCCATCAGTCATGATGAGGCCAGAAGAGAAGAAGACCTGCAGAGGTCAGTAGAGGGTCGGGCAGCAtcagatgaggaagaggaggagatgaGCGTGGATGAAGGACAGTGCTGCCATCTGGAGGTGAAACGACTGATCAACAGATTACACAGCTGTTCTAAAGGGTGTCAGAAAGCTGCTATCTGCGATTGGCTCGTCTCTCAGAGCTCAGCTCATAGCAAAGACAGGGAAACACGTGTGTGCATTCCTCAAGCCAACGAGGGGGGAATCCAAGCGGGAAAGATGGAGCAGAAAGAGGTGGAGAGTGTGAGGGTTTATCATTCACTGCTGGAGGAGAGGCTCACGTTACTGCTGCAGATACCACACAAACTGCTGGATGAAGTCCCGTGTTTTCCTCAGACTGCACTCCGGTGATCCTGGTGGTGGACACACTGTGCCGCCAGCTCCTCTCCAGTGACCTCCTGGACGGAGGAGAGGAAGTGAGCGCTGGGTCACGACCTTCCGGGACCTCAGGTCACCCAAACACATCCAACCCCCTTCTGATGTCCTGCTG

Function

NR:

description
EF-hand and coiled-coil domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252965.1 True 2188 mRNA 0.52 9 7961025 7969606
XM_043252966.1 False 1916 mRNA 0.55 8 7961257 7969606

Neighbor

gene id symbol gene type direction distance location
cdk18 si:dkey-166c18.1,cdk18,LOC107654374,LOC107756627,LOC107698687,LOC108254840,LOC101468598 coding downstream 130787 7754526 ~ 7830238 (-)
mfsd4aa mfsd4a,LOC107756626,LOC107654377,LOC107582392,LOC107751189 coding downstream 207211 7742245 ~ 7753814 (-)
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding downstream 465311 7489283 ~ 7495714 (-)
c11h1orf50 zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182 coding downstream 666575 7290610 ~ 7294450 (-)
cdc42 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 674926 7272842 ~ 7286099 (-)
LOC122354498 sox13,LOC107580906,LOC107743263,LOC107751191,LOC107582435 coding upstream 23846 7993452 ~ 8019940 (-)
kif17 kif17 coding upstream 78137 8047743 ~ 8054838 (-)
sh2d5 sh2d5,LOC107694878,LOC107743262,LOC107580363,LOC107697739,LOC107751244 coding upstream 85361 8054967 ~ 8060059 (-)
hp1bp3 LOC107694877,LOC107579967,LOC107743260,LOC107751222,LOC107582389,LOC107699409 coding upstream 91184 8060790 ~ 8067461 (-)
il17rc NA coding upstream 237691 8207297 ~ 8216886 (-)
G79792 NA non-coding downstream 219527 7677242 ~ 7741498 (-)
LOC122354607 NA non-coding downstream 247322 7711597 ~ 7713703 (-)
LOC122354606 NA non-coding downstream 257264 7701425 ~ 7703761 (-)
G79777 NA non-coding downstream 319839 7638442 ~ 7641186 (-)
G79791 NA non-coding downstream 442735 7517876 ~ 7518290 (-)
G79948 NA non-coding upstream 127738 8097344 ~ 8150834 (-)
G79957 NA non-coding upstream 174357 8143963 ~ 8144953 (-)
G79965 LOC107582387 non-coding upstream 215727 8185333 ~ 8191088 (-)
G79968 NA non-coding upstream 233789 8203395 ~ 8204235 (-)
G79969 NA non-coding upstream 248137 8217743 ~ 8218050 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other downstream 524554 7368372 ~ 7436471 (-)
LOC122354641 svbp other downstream 805750 7153465 ~ 7155275 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other downstream 819789 7131578 ~ 7141236 (-)
vamp3 vamp3 other downstream 1113235 6813625 ~ 6847790 (-)
G79565 NA other downstream 1864545 6096133 ~ 6096480 (-)
snrpe snrpe other upstream 59000 8028606 ~ 8035551 (-)
G79947 LOC107694876,LOC107743257,LOC107579790,LOC107751196 other upstream 122794 8092400 ~ 8143620 (-)
G79967 NA other upstream 226212 8195818 ~ 8196385 (-)
LOC122354197 LOC107694863,LOC107582459,LOC107751197,LOC107697444,LOC107581824 other upstream 226866 8196472 ~ 8206841 (-)
LOC122353694 NA other upstream 522165 8491771 ~ 8497285 (-)

Expression


Co-expression Network