LOC122354689 (kcnmb2,LOC107600278,LOC107656067,LOC107699784)



Basic Information


Item Value
gene id LOC122354689
gene name kcnmb2,LOC107600278,LOC107656067,LOC107699784
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 16655132 ~ 16660615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043252972.1
ctctctctctgccaggGCTGGAGGAAGGGATCAATGCCGTGAATGGTCCTCCTCTCCTTGCTCACTACtctcattattattttccacCCTGCCACTCGCCAGCCCATGAATAGTCAATAACAAACCAACAGGCAGGAAATGAAGGAGCAGATGCTTAGTTCAATGCCTAGAgTCAACCCGGCAGTCTTTTTTGAGTGCTTCAGAAAGAGCCGCACACACTGGAATAACTGGGAGAATGTTTCTGTGGGCTGGAAGTAAAGGAGCTCAGGGATCAGGAAGTGAGAGAAGGACCTTTTATCAGAAGATTCGAGAGTATGATATTTTGGAGAAGAGGAGGACTGTCACAGCACTGAAGGCTGGAGAGGACAGAGCCATTCTCTTAGGCCTCAGCATGATCCTTTTCTCTGCCATGATGTACTTTGTGTTAGGCATCACAATGGTGCGCTCGTACTCAGACAGCATTTGGACAGAGGAGTCAAACTGCACAGTACTGAACTCTAGCATAGTTGCTGAGATTAACTGCAGCTACAGCTGTGGCTCAGAGTGCAGGAAGAACTCCAGGTTTCCCTGTCTTCAAGTATTCGTCGGTCTGAACTTCACCAGCAAAGTTCTGCGGCTGTCATACAACGAGGAGGCCCACGAGGCCAACCCTGAGTGTTTTTACATCCCAAAGTATAGGGACCACACGCTGATGCACAGCATTGTGATGAACATCTCAGAGCGTCTGAAGACGCACCAGCAGGTCCTGTGTTACTACGACCCCTCGGAGCAGCAGGACAGCGTCCTCCTGACGCGTCTCTACGGCCGCGGGGCCATCATTAGCTCGCTCCTCTGGCCCACGTGCACGCTGGTGGGGGGCACGCTCATCATCGCCATGGTGAAGCTCACTCAGTACCTGTCCTTCTTGTGCGAGCAGATCAGCCGCATTAAAAGGTGA

Function


symbol description
kcnmb2 Predicted to enable calcium-activated potassium channel activity and potassium channel regulator activity. Predicted to be involved in detection of calcium ion. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated potassium channel complex. Orthologous to human KCNMB2 (potassium calcium-activated channel subfamily M regulatory beta subunit 2).

NR:

description
PREDICTED: calcium-activated potassium channel subunit beta-2-like isoform X2

GO: NA

KEGG:

id description
K04938 KCNMB2; potassium large conductance calcium-activated channel subfamily M beta member 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043252972.1 True 937 mRNA 0.52 6 16655132 16660615

Neighbor


gene id symbol gene type direction distance location
LOC122354663 LOC107753811,LOC107656084,LOC107593146 coding downstream 99457 16554408 ~ 16555675 (-)
tbl1xr1a tbl1xr1,LOC107600277,LOC107718892,LOC106584305,LOC107557783 coding downstream 182165 16431654 ~ 16472967 (-)
LOC122353772 spata16,LOC107593153 coding downstream 705542 15842161 ~ 15949590 (-)
b3gnt5a b3gnt5a,LOC107593139,LOC107656073,LOC107753797,LOC107674530,LOC107718888,LOC107563744 coding downstream 873443 15776187 ~ 15781689 (-)
LOC122353685 NA coding downstream 1006787 15646561 ~ 15648345 (-)
LOC122354367 LOC103358720 coding upstream 105758 16766373 ~ 16769063 (-)
LOC122353589 LOC103358720 coding upstream 228975 16889590 ~ 16891932 (-)
lrig1 lrig1,LOC107753782,LOC107716980,LOC107557776,LOC107600281 coding upstream 298288 16958903 ~ 16992270 (-)
suclg2 suclg2,LOC107753779,LOC107729402,LOC107699794,LOC107656059 coding upstream 435706 17096321 ~ 17184119 (-)
LOC122353607 kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395,LOC107656060,LOC107699793 coding upstream 788652 17449267 ~ 17454774 (-)
G82447 NA non-coding downstream 6578 16610565 ~ 16648554 (-)
G82445 NA non-coding downstream 45424 16606799 ~ 16609708 (-)
G82437 NA non-coding downstream 66372 16588394 ~ 16588760 (-)
LOC122354516 NA non-coding downstream 151698 16499216 ~ 16503434 (-)
G82389 NA non-coding downstream 209901 16427798 ~ 16445231 (-)
G82496 NA non-coding upstream 338046 16998661 ~ 16998866 (-)
G82578 NA non-coding upstream 786544 17447159 ~ 17447681 (-)
LOC122353733 NA non-coding upstream 804543 17465158 ~ 17476011 (-)
G82582 NA non-coding upstream 874233 17534848 ~ 17546075 (-)
G82577 NA non-coding upstream 901526 17562141 ~ 17563010 (-)
LOC122353776 NA other downstream 48552 16604004 ~ 16606580 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other downstream 61202 16590806 ~ 16593930 (-)
LOC122354045 NA other downstream 1040195 15595565 ~ 15614937 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other downstream 1078067 15552356 ~ 15577065 (-)
LOC122354564 NA other downstream 1253441 15400918 ~ 15401691 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other upstream 118297 16778912 ~ 16912574 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other upstream 876888 17537503 ~ 17540171 (-)
G82588 phf2,LOC107556181,LOC107685641 other upstream 889966 17550581 ~ 17559836 (-)
G82590 fam120a,LOC107581418,LOC107685640,LOC107691381,LOC107749502,LOC107556189 other upstream 912987 17573602 ~ 17576984 (-)
LOC122354622 NA other upstream 974191 17634806 ~ 17640897 (-)

Expression



Co-expression Network