LOC122353642


Basic Information

Item Value
gene id LOC122353642
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8486482 ~ 8487893 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252039.1
AATAACAGgctaactttttttatataataaaataagatctTTATGACTTGCTATGCAGCCTACAAATGCGACATCAGAAGGATGCAGCCTTCCGTTTGAGAAACAGCATGGGCTAATATGATTAGCAAGAGAAGACAGTTTTAGGGCAGTGTCAAAACATCGACGAATGGATATGGCACAGGCAAGACACAAGAATAATCCAAACCGGTCAGTCAACAGAATCCAGGAGGGGTTATCCAGAAACATGAGCAATAGTCCAGGCAAGGTGAATGTGTGCAATCAGTGCAATggctgatgggaaatgcagtccagGGTGGAGTGCAACATTCTGTGTGGTGTGAGAGGGAACATACAGAAGAGCGTCCTCTGGTGACAACTGACTGAAAGCATGGAATTAACAACAGTTATATGGTAAAGGCTAAAGGAAAACAACAGATGCGTCCACATTTAATCTGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252039.1 True 458 lncRNA 0.43 3 8486482 8487893

Neighbor

gene id symbol gene type direction distance location
cacna2d3 cacna2d3,LOC107751209,LOC107582378,LOC107743247 coding upstream 892 8440711 ~ 8485590 (+)
cacna1da cacna1da,LOC107743249 coding upstream 51263 8348650 ~ 8435219 (+)
ninj1 si:ch1073-278o19.1,LOC107579083,LOC107694872,LOC107751205,LOC107696824 coding upstream 184504 8294876 ~ 8301978 (+)
LOC122354006 LOC107697231,LOC107582385,LOC107694862,LOC107581815,LOC107579335,LOC107751199 coding upstream 256896 8223356 ~ 8229586 (+)
erc2 erc2,LOC107694874,LOC107699320,LOC107582387 coding upstream 285213 8153932 ~ 8201269 (+)
LOC122353978 usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757 coding downstream 104233 8592126 ~ 8601392 (+)
LOC122353989 sox13,LOC107580906,LOC107743263,LOC107582435,LOC107751191 coding downstream 128990 8616883 ~ 8637496 (+)
usp48 usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757 coding downstream 221408 8709301 ~ 8718145 (+)
zbtb40 LOC107575478,LOC107659551,LOC107743242,LOC107685987,LOC107751213,LOC107582425 coding downstream 231545 8719438 ~ 8729558 (+)
psma5 psma5 coding downstream 265163 8753056 ~ 8757807 (+)
G79908 NA non-coding upstream 158374 8326490 ~ 8328108 (+)
G79887 LOC107743253,LOC107578868,LOC107694869 non-coding upstream 206728 8279361 ~ 8279754 (+)
G79860 LOC107581815,LOC107694862 non-coding upstream 218217 8267791 ~ 8268265 (+)
G79853 NA non-coding upstream 219061 8260602 ~ 8267421 (+)
G79851 NA non-coding upstream 226825 8259218 ~ 8259657 (+)
G80031 NA non-coding downstream 20760 8508653 ~ 8641068 (+)
G80032 NA non-coding downstream 22356 8510249 ~ 8516224 (+)
G80039 NA non-coding downstream 61892 8549785 ~ 8656414 (+)
G80042 NA non-coding downstream 67538 8555431 ~ 8662482 (+)
G80047 NA non-coding downstream 90918 8578811 ~ 8697260 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other upstream 203581 8280815 ~ 8282901 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 335913 8075419 ~ 8150569 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 745041 7727787 ~ 7741441 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 1661937 6818545 ~ 6824545 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other upstream 3139650 5286439 ~ 5346832 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other downstream 114294 8602187 ~ 8604284 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 330497 8818390 ~ 8819279 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 387395 8875288 ~ 8878988 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other downstream 391690 8879583 ~ 8881656 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other downstream 403557 8891450 ~ 8979241 (+)

Expression


Co-expression Network