LOC122353822


Basic Information

Item Value
gene id LOC122353822
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18113348 ~ 18122237 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252059.1
TCGCCAGAGACTGATAAAagagacaacaaaacaaaaaacatcggAAACGCTGCGCTCAAACCGCACGAACGGAAGGAAGGACGACCAATCCTTAAAAACCGGCTTCTGGTTACATCTTAGGCTGAGCGGTTAGCACCGAGATGTTTTGGCGATGTCTGACCCGCTGCACCTGATCTCGCGGCGTGTGCTCTCGGCGAGCAGCGCCGCTAGGCTGCTAACGTCATCAGCAACACAGGCTAAAACCGACTAGCCGGCTAACAGCTCAGCCAACAAATTAACCGACTGTGCCCAGCCCCGCAATCCGAGCCACAACCCGTCGGCGACGACTTCGAGTTCATGCCGCATGGGACACTCCCACGATGACGTCAGCGGCGCGCACACAACGCGTGAGGGAGCGTGGCACGATATGACGGAGTGACCACATCAGAAGCTGAGAAGCAGGACTCGAGACCACGCCATGAGCAGCATGtgcttcagaaaatgtattGGGAGCAGCCCTAAAAGAAGAGCTCAGTGACATCACAGCCATTATGAAAAGTAAGATGCCTTTTGCCCATGGCATGATGACTTCAAGCAAACGCCAagaaaaatcacagtttttgttttaaaataaaaaatcataaaattacaACACAACAATCTTACTCAACCACGCTGTGCAATCAAATCTGTTCATCaatcagtttgttgttttcaccTGTGCCTCTTTAGTTAAGACAGGGGCTGAATTTAAAATGGCACACTTGCTTGTATGCTATTTGAATTTCAGTCAattctttatgta
>XR_006252060.1
TCGCCAGAGACTGATAAAagagacaacaaaacaaaaaacatcggAAACGCTGCGCTCAAACCGCACGAACGGAAGGAAGGACGACCAATCCTTAAAAACCGGCTTCTGGTTACATCTTAGGCTGAGCGGTTAGCACCGAGATGTTTTGGCGATGTCTGACCCGCTGCACCTGATCTCGCGGCGTGTGCTCTCGGCGAGCAGCGCCGCTAGGCTGCTAACGTCATCAGCAACACAGGCTAAAACCGACTAGCCGGCTAACAGCTCAGCCAACAAATTAACCGACTGTGCCCAGCCCCGCAATCCGAGCCACAACCCGTCGGCGACGACTTCGAGTTCATGCCGCATGGGACACTCCCACGATGACGTCAGCGGCGCGCACACAACGCGTGAGGGAGCGTGGCACGATATGACGGAGTGACCACATCAGAAGCTGAGAAGCAGGACTCGaactATCATTGCAGTGGTTATTCAAAAAACATCACCACTGTTTAACAATAAACCTCTCAGATAAATACTTACCAGTCTGTAATGGAGGTGTGGCTGCAGGCGGATGGTTGGTGCCATAACGTTCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252059.1 True 784 lncRNA 0.48 4 18118765 18122237
XR_006252060.1 False 574 lncRNA 0.53 4 18113348 18122237

Neighbor

gene id symbol gene type direction distance location
qrich1 qrich1,LOC107656052,LOC107600291,LOC107753772,LOC107729405,LOC107696825,LOC107558890 coding downstream 6002 18099295 ~ 18107346 (-)
twf2b twf2,twf2b,LOC107600317,LOC107655958 coding downstream 18585 18086775 ~ 18094763 (-)
cishb LOC107753774,LOC107600289,LOC107656055 coding downstream 27409 18082731 ~ 18085939 (-)
uba3 LOC107753775,LOC107656056,LOC107558885,LOC107729399,LOC107696817 coding downstream 31275 18075590 ~ 18082073 (-)
tmf1 LOC107600287,LOC107753777,LOC107656057,LOC107729398,LOC107696823,LOC107558889 coding downstream 38811 18064928 ~ 18074537 (-)
stimate tmem110,LOC107656046,LOC107755187,LOC107696834,LOC107746891 coding upstream 21616 18143853 ~ 18153168 (-)
sfmbt1 sfmbt1,LOC107600298,LOC107696806,LOC107656044 coding upstream 31848 18154085 ~ 18172225 (-)
prkcdb prkcd,prkcdb,LOC107728641,LOC107656045,LOC107600299,LOC107696837,LOC108435819 coding upstream 51408 18173645 ~ 18192786 (-)
dido1 LOC107600301,LOC107728611,LOC107656039 coding upstream 129834 18252071 ~ 18272040 (-)
zmynd8 zmynd8,LOC107728612,LOC107656040 coding upstream 151039 18273276 ~ 18290657 (-)
LOC122354075 NA non-coding downstream 293889 17818902 ~ 17819459 (-)
G82628 LOC107738115,LOC107654540 non-coding downstream 402542 17710451 ~ 17710806 (-)
G82619 NA non-coding downstream 418840 17693919 ~ 17694508 (-)
G82606 NA non-coding downstream 470821 17634803 ~ 17642527 (-)
LOC122354623 NA non-coding downstream 470821 17641036 ~ 17642527 (-)
G82753 LOC107600292,LOC107656050,LOC107746889 non-coding upstream 3751 18125988 ~ 18133130 (-)
G82918 NA non-coding upstream 487487 18609724 ~ 18610059 (-)
G82932 psmd6,LOC107696848 non-coding upstream 541184 18663421 ~ 18664566 (-)
G82934 NA non-coding upstream 577015 18699252 ~ 18699565 (-)
G82950 NA non-coding upstream 709939 18832176 ~ 18838951 (-)
tafa4b fam19a4b,fam19a4,LOC107655986,LOC107600333,LOC107558879,LOC107696804,LOC107729393 other downstream 65225 18008365 ~ 18048123 (-)
LOC122354073 NA other downstream 292412 17820273 ~ 17820936 (-)
LOC122353787 prkd2,LOC107728165,LOC107699186,LOC107699228,LOC107752286 other downstream 341738 17742916 ~ 17771610 (-)
LOC122354587 prpsap2,LOC107720040,LOC107581734,LOC107737786 other downstream 396652 17714752 ~ 17716696 (-)
LOC122354622 NA other downstream 472451 17634806 ~ 17640897 (-)
mustn1b mustn1,mstn1,LOC103145767 other upstream 13647 18135884 ~ 18137388 (-)
fgd5a LOC107728634,LOC107600300,LOC107656043,LOC107696838,LOC107746894 other upstream 75592 18197829 ~ 18231521 (-)
trnav-aac_24 NA other upstream 448139 18570376 ~ 18570448 (-)
trnav-aac_25 NA other upstream 448914 18571151 ~ 18571223 (-)
G83230 golt1a,got1a,LOC107727772 other upstream 2045068 20167305 ~ 20171305 (-)

Expression


Co-expression Network