LOC122354296


Basic Information

Item Value
gene id LOC122354296
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8823084 ~ 8824181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252100.1
taattaaacgAATGCTCATATCTGATGGGAGAATAAACCTTTTCCGACGTGTTACAGCGTGATAATTATGATTAATGGGCttaatttcattgtgttttttgcaatgcaatCTGATCGAGGAGCACACCGCACGCATCCAGTGTCTAACCCCAGGTTATTttgccccccaaaaaaatccACAGATAAATGCCCAAGCGAGCAAAGGGAAGCACATAATAACGCTGGAATCCAGAGCTTGCGGGAGAATTAGTTCCCTTGGTTCTCTTCTAGCGTTGGCAGCATTTATGTGTACGCTGAGAGACCAGATGGGATTTCACCAGCCTGGGCTCACCATCGGCTCGACCGCCGGAGCCACTTTGGTCTCACCGATAACTTCTGGAGCGCGGCCAAGACCAGTTGAATGGCTCGGTGAGGTTGCCAAGgacaaaaacattcacagaCATGGAGCAAATTAACTACGCGATGTTTATCTCAGCACGTCCAATCGGCTCCGCTCTATGGGTTGCTAAGGATGCTTTACGCTATTCGGATTCGAAGTGCAAGCGGATGAACGGAAGCCAGGGTTTTGAGTTTCGCAAGAAGTTCCCTCCTCAACAAAAAATGGTTCACATTTACAGACTGTGAAAAGCGTTCAGAGGGCTAGGCTCGGGCTATTCATGCGCACGATTATACTTGTTCATGAAGACTCGTGAGTGGCATGTTCGTTCGGCTTGATCTGGTGTCAGCAGAATTGATCAAGCTGTGTCAGCGTGATTGCTTTTCTTGCTTTTTGTTTAACAAGATTTGACCGACTTCATAAGCCGTGGGATATTTGCTTTACGTTAATGAATTTTGCCACAGCGATCTAAGCACATTTAGGAAACGCATCAACAAGTCTGAAAAGCCTGGAAACGTTTCCGGTGGACGGTTTTAACTTCCACATGCGTCCGAAATCTGTCTGAAACCTGGGtttatgtgcaaaataaataaatgaataaataagatgaA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252100.1 True 987 lncRNA 0.45 2 8823084 8824181

Neighbor

gene id symbol gene type direction distance location
rrp9 rrp9,LOC107659541 coding upstream 19793 8797976 ~ 8803291 (+)
nfya nfya,LOC107715785,LOC107685981,LOC107576873,LOC107659544,LOC107582374,LOC107718225 coding upstream 37024 8779094 ~ 8786060 (+)
sort1a sort1a,LOC107659546,LOC107685983,LOC107582375,LOC107715784,LOC107718224 coding upstream 44521 8758785 ~ 8778563 (+)
psma5 psma5 coding upstream 65277 8753056 ~ 8757807 (+)
zbtb40 LOC107575478,LOC107659551,LOC107743242,LOC107685987,LOC107751213,LOC107582425 coding upstream 93526 8719438 ~ 8729558 (+)
gpx1a gpx1a,LOC107577558,LOC107685977,LOC107718196 coding downstream 48610 8872791 ~ 8874701 (+)
bhlhe40 bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081 coding downstream 173676 8997857 ~ 9000630 (+)
arl8bb LOC107573080,LOC105934196,LOC107715779,LOC107659529,LOC107095653,LOC107577661,LOC107685974 coding downstream 179899 9004080 ~ 9009237 (+)
sema3fb LOC107715794,LOC107659533,LOC107575741,LOC107685972,LOC107572222 coding downstream 260460 9084641 ~ 9141929 (+)
LOC122353647 LOC107718244,LOC107715798,LOC107686009,LOC107575380,LOC107551786,LOC107677506 coding downstream 437759 9261940 ~ 9266699 (+)
G80047 NA non-coding upstream 125824 8578811 ~ 8697260 (+)
G80042 NA non-coding upstream 160602 8555431 ~ 8662482 (+)
G80039 NA non-coding upstream 166670 8549785 ~ 8656414 (+)
G80031 NA non-coding upstream 182016 8508653 ~ 8641068 (+)
LOC122353990 NA non-coding upstream 207177 8615175 ~ 8615907 (+)
G80120 NA non-coding downstream 116903 8941084 ~ 8941521 (+)
G80119 NA non-coding downstream 163445 8987626 ~ 9030946 (+)
LOC122354434 NA non-coding downstream 188579 9012760 ~ 9050856 (+)
G80272 NA non-coding downstream 427613 9251794 ~ 9254355 (+)
G80282 NA non-coding downstream 492735 9316916 ~ 9318241 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other upstream 3805 8818390 ~ 8819279 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other upstream 218800 8602187 ~ 8604284 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other upstream 540183 8280815 ~ 8282901 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 672515 8075419 ~ 8150569 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 1081643 7727787 ~ 7741441 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 51107 8875288 ~ 8878988 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other downstream 55402 8879583 ~ 8881656 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other downstream 67269 8891450 ~ 8979241 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other downstream 598769 9422950 ~ 9425302 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other downstream 697617 9521798 ~ 9540121 (+)

Expression


Co-expression Network