LOC122354516


Basic Information

Item Value
gene id LOC122354516
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 16499216 ~ 16503434 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252117.1
cctgaaagaagaaagtcaaatacacctaggatgccttgaggGTGTGAAGGTCGAAGTGGCGGAGTGATACGCTGTGATAGGATACCAGATCTTCTGCAACCTAGCACCAACTTGATTTTAGCCAATGAGCTTAAAGCTCTTTTAGGAACTCAGGCTTGTCATGAAGCAAAAACATCACACATCAGTCGCCTTTGATGATTTAGAAACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252117.1 True 209 lncRNA 0.44 3 16499216 16503434

Neighbor

gene id symbol gene type direction distance location
tbl1xr1a tbl1xr1,LOC107600277,LOC107718892,LOC106584305,LOC107557783 coding downstream 26249 16431654 ~ 16472967 (-)
LOC122353772 spata16,LOC107593153 coding downstream 549626 15842161 ~ 15949590 (-)
b3gnt5a b3gnt5a,LOC107593139,LOC107656073,LOC107753797,LOC107674530,LOC107718888,LOC107563744 coding downstream 717527 15776187 ~ 15781689 (-)
LOC122353685 NA coding downstream 850871 15646561 ~ 15648345 (-)
LOC122353771 NA coding downstream 867948 15630130 ~ 15631268 (-)
LOC122354663 LOC107753811,LOC107656084,LOC107593146 coding upstream 50974 16554408 ~ 16555675 (-)
LOC122354689 kcnmb2,LOC107600278,LOC107656067,LOC107699784 coding upstream 151698 16655132 ~ 16660615 (-)
LOC122354367 LOC103358720 coding upstream 262939 16766373 ~ 16769063 (-)
LOC122353589 LOC103358720 coding upstream 386156 16889590 ~ 16891932 (-)
lrig1 lrig1,LOC107753782,LOC107716980,LOC107557776,LOC107600281 coding upstream 455469 16958903 ~ 16992270 (-)
G82389 NA non-coding downstream 53985 16427798 ~ 16445231 (-)
G82378 NA non-coding downstream 153496 16341847 ~ 16345720 (-)
G82381 NA non-coding downstream 159111 16339857 ~ 16340105 (-)
G82376 NA non-coding downstream 163602 16335393 ~ 16335614 (-)
LOC122354638 NA non-coding downstream 165146 16332144 ~ 16334070 (-)
G82437 NA non-coding upstream 84960 16588394 ~ 16588760 (-)
G82445 NA non-coding upstream 103365 16606799 ~ 16609708 (-)
G82447 NA non-coding upstream 107131 16610565 ~ 16648554 (-)
G82496 NA non-coding upstream 495227 16998661 ~ 16998866 (-)
G82578 NA non-coding upstream 943725 17447159 ~ 17447681 (-)
LOC122354045 NA other downstream 884279 15595565 ~ 15614937 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other downstream 922151 15552356 ~ 15577065 (-)
LOC122354564 NA other downstream 1097525 15400918 ~ 15401691 (-)
LOC122354561 NA other downstream 1263780 15233933 ~ 15235436 (-)
G82067 NA other downstream 1285158 15204961 ~ 15214058 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other upstream 87372 16590806 ~ 16593930 (-)
LOC122353776 NA other upstream 100570 16604004 ~ 16606580 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other upstream 275478 16778912 ~ 16912574 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other upstream 1034069 17537503 ~ 17540171 (-)
G82588 phf2,LOC107556181,LOC107685641 other upstream 1047147 17550581 ~ 17559836 (-)

Expression


Co-expression Network