LOC122354607


Basic Information

Item Value
gene id LOC122354607
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7711597 ~ 7713703 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252132.1
CACCGAAGCACATCACATCTTACCTGATGCTTCCTCTGACGGGCAACGTCGGGTCCTGAAAGTGCAGTGACATCAGTAGAAGTTTGAGGAGCTGTTCCTGCCGCGCAGCAGGAAGTGGGCGGGATGAGCTGTGAGAACACACACGTCTGAAAGCCACATCACAGAGACTCTACTCAATCTTCAACATTCTTCCTGGGTTTGCAGCAGGTCATGAGCTAAAGCCACTTAAAGCCCAGCACAACAGgTGCAGTGACCAGTCAGTATTTCTTCTTTTCATCATCATTCAGCTGTTTATCTTGCAGTGACAAATTAATTTctgatgtataaatgtatagTCTCTTTTTCTCAATCACACATTGGCAGATTTTTCTGAAACAGTCTTATCATTCTCTAAACTGTGAATGCAAACGTCACAACTTCAGAACTTTATTGCATGTCTGCAAAAGTTACTtaccaaaaacatttcattcatgcttcaaaaTCTAGTTATCTTGTTAATAATTTGGCCAAGGCCACACAAATATAAAGTAGTCACTGTGTGAGCCACActggtcaaaatgtttagttgttttCACTATGACAAATGGTTTTCAACCGTGGAAATGAAGCTTTCACGAAAAACTAAATCTGATATTTGTTGAAAAGAGTCAATTGCACATAAAAAAGTATATCAACATGTATTTGTGcatattgtatttatacagtacatttatttttgtacaaatgtattacaaatgtTAGTGatctatatacacatatgcTCCCAAACATGGTTGATTGAAATTGCATTGCAATTAGAGGTCATTTCCCAATTTAGCAGACATTATAAACAATGCCAGATATTTATGGAATATACATACTGACGTTCCCCattaaaatggactgttttgAATGTGAGGGCTTACGTGATGAAAAATGATTGAGAAGTTGTGAAGAGTTTGACAGTTTAAGTCAACTCATCAGTTTTGATCAACAAGCCATATGCAAACAGCCGTTGTGCAAACTGCAGACAATTGTACTTACTGTACTTACTTACATG

Function

GO:

id name namespace
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252132.1 True 1039 lncRNA 0.37 3 7711597 7713703

Neighbor

gene id symbol gene type direction distance location
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding downstream 215883 7489283 ~ 7495714 (-)
c11h1orf50 zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182 coding downstream 417147 7290610 ~ 7294450 (-)
cdc42 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 425498 7272842 ~ 7286099 (-)
camta1b LOC107751174,LOC107654393,LOC107756644,LOC107654440,LOC107582404 coding downstream 590469 6848989 ~ 7121128 (-)
per3 per3,LOC107751173,LOC107756610,LOC107582444 coding downstream 872765 6818532 ~ 6838832 (-)
mfsd4aa mfsd4a,LOC107756626,LOC107654377,LOC107582392,LOC107751189 coding upstream 28542 7742245 ~ 7753814 (-)
cdk18 si:dkey-166c18.1,cdk18,LOC107654374,LOC107756627,LOC107698687,LOC108254840,LOC101468598 coding upstream 40823 7754526 ~ 7830238 (-)
si:ch211-112f3.4 LOC107582165,LOC107654372,LOC107743264,LOC107751241 coding upstream 247322 7961025 ~ 7969606 (-)
LOC122354498 sox13,LOC107580906,LOC107743263,LOC107751191,LOC107582435 coding upstream 279749 7993452 ~ 8019940 (-)
kif17 kif17 coding upstream 334040 8047743 ~ 8054838 (-)
LOC122354606 NA non-coding downstream 7836 7701425 ~ 7703761 (-)
G79777 NA non-coding downstream 70411 7638442 ~ 7641186 (-)
G79791 NA non-coding downstream 193307 7517876 ~ 7518290 (-)
G79768 NA non-coding downstream 384363 7268597 ~ 7327234 (-)
G79625 NA non-coding downstream 1092360 6611911 ~ 6619237 (-)
G79920 NA non-coding upstream 240757 7954460 ~ 8004362 (-)
G79948 NA non-coding upstream 383641 8097344 ~ 8150834 (-)
G79957 NA non-coding upstream 430260 8143963 ~ 8144953 (-)
G79965 LOC107582387 non-coding upstream 471630 8185333 ~ 8191088 (-)
G79968 NA non-coding upstream 489692 8203395 ~ 8204235 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other downstream 275126 7368372 ~ 7436471 (-)
LOC122354641 svbp other downstream 556322 7153465 ~ 7155275 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other downstream 570361 7131578 ~ 7141236 (-)
vamp3 vamp3 other downstream 863807 6813625 ~ 6847790 (-)
G79565 NA other downstream 1615117 6096133 ~ 6096480 (-)
snrpe snrpe other upstream 314903 8028606 ~ 8035551 (-)
G79947 LOC107694876,LOC107743257,LOC107579790,LOC107751196 other upstream 378697 8092400 ~ 8143620 (-)
G79967 NA other upstream 482115 8195818 ~ 8196385 (-)
LOC122354197 LOC107694863,LOC107582459,LOC107751197,LOC107697444,LOC107581824 other upstream 482769 8196472 ~ 8206841 (-)
LOC122353694 NA other upstream 778068 8491771 ~ 8497285 (-)

Expression


Co-expression Network