trnac-gca_10


Basic Information

Item Value
gene id trnac-gca_10
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1107645 ~ 1107716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1480
gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccctggttcaaatccgggtgccccct

Function

GO:

id name namespace
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1480 True 72 tRNA 0.56 1 1107645 1107716

Neighbor

gene id symbol gene type direction distance location
trnac-gca_9 NA coding downstream 151 1107423 ~ 1107494 (-)
trnac-gca_8 NA coding downstream 369 1107205 ~ 1107276 (-)
trnac-gca_7 NA coding downstream 585 1106989 ~ 1107060 (-)
trnac-gca_6 NA coding downstream 795 1106779 ~ 1106850 (-)
trnac-gca_5 NA coding downstream 1229 1106345 ~ 1106416 (-)
trnac-gca_11 NA coding upstream 1025 1108741 ~ 1108812 (-)
trnac-gca_12 NA coding upstream 1237 1108953 ~ 1109024 (-)
trnac-gca_13 NA coding upstream 1456 1109172 ~ 1109242 (-)
trnac-gca_14 NA coding upstream 1888 1109604 ~ 1109675 (-)
trnac-gca_15 NA coding upstream 2098 1109814 ~ 1109885 (-)
G78338 NA non-coding downstream 33189 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 55101 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 57709 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 83835 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 200071 905807 ~ 907574 (-)
G78354 NA non-coding upstream 60606 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 96160 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 104560 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 174016 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 179577 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 132858 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 313509 599107 ~ 794136 (-)
G78170 NA other downstream 651647 453134 ~ 455998 (-)
G78144 alas1 other downstream 658744 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 702234 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 109503 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 480988 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 596908 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1705636 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1711872 2819588 ~ 2830203 (-)

Expression


Co-expression Network