trnac-gca_54


Basic Information

Item Value
gene id trnac-gca_54
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1122981 ~ 1123052 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1525
gggggtatagctcagtggtagagcatttgactgcagatcaacaggtccccggttcaaatccaggtgccccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1525 True 72 tRNA 0.56 1 1122981 1123052

Neighbor

gene id symbol gene type direction distance location
trnac-gca_53 NA coding downstream 1438 1121472 ~ 1121543 (-)
trnac-gca_52 NA coding downstream 1659 1121251 ~ 1121322 (-)
trnac-gca_51 NA coding downstream 2092 1120818 ~ 1120889 (-)
trnac-gca_50 NA coding downstream 2310 1120600 ~ 1120671 (-)
trnac-gca_49 NA coding downstream 2528 1120382 ~ 1120453 (-)
trnac-gca_55 NA coding upstream 591 1123643 ~ 1123714 (-)
trnac-gca_56 NA coding upstream 1239 1124291 ~ 1124362 (-)
trnac-gca_57 NA coding upstream 1456 1124508 ~ 1124579 (-)
trnac-gca_58 NA coding upstream 1893 1124945 ~ 1125015 (-)
trnac-gca_59 NA coding upstream 2112 1125164 ~ 1125234 (-)
G78338 NA non-coding downstream 48525 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 70437 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 73045 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 99171 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 215407 905807 ~ 907574 (-)
G78354 NA non-coding upstream 45270 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 80824 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 89224 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 158680 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 164241 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 148194 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 328845 599107 ~ 794136 (-)
G78170 NA other downstream 666983 453134 ~ 455998 (-)
G78144 alas1 other downstream 674080 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 717570 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 94167 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 465652 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 581572 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1690300 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1696536 2819588 ~ 2830203 (-)

Expression


Co-expression Network