XLOC_006620 (AL831745.2)


Basic Information

Item Value
gene id XLOC_006620
gene name AL831745.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24602410 ~ 24606627 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012771
GGTAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCTTCAACTGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTGGCACACTCATTTGtttcctTCCAGGCACAAGCATATGGTGATCAATCCACACATTCCATAATCCCAGCaataaaagattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCAGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATCGCTAAGACAACAGTGGCCAGAGTTCTTTGACATACCCAATTAGCACATATCATAGAGAGACAGGTGTTTGCTGAGTTTAATAGAATCGCCAGTAAGAATCTTGAGGGAGACTTCTTTGAGGCTCTGGACCAGTATGCCCCACGTTTCATTGAACTTTTCAAAACAAAATAGGGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATGACACCAGACGACACAGTACTTCGCTCTGTTGTCCTCAAAGGCATTCCCATTTTACTCGATGATGACTCCAGTGAATTCTACAAGACTTGCTCTGATACAGAGAGAGACGAGGCCCTAGAATGCATCACTGTAGTCCTCACGAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTATTCTCATGGATCATGTTAAAAACTTGCCTCAGGCAGTTTGTCCTTTGTTTGGTCTTACATATGCATTGCATTTGGATACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAACCTCCCACCAAAACTGTTAACTCCTGAAGAACAGTCTTCTGGGTTAGAACAGTAAAGAGCCATCGGCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTCATGGAACTGTTCTCGCTTATTTACGTtctcaatgg
>TCONS_00013789
GGTAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCTTCAACTGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTGGCACACTCATTTGtttcctTCCAGGCACAAGCATATGGTGATCAATCCACACATTCCATAATCCCAGCaataaaagattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCAGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATCGCTAAGACAACAGTGGCCAGAGTTCTTTGACATACCCAATTAGCACATATCATAGAGAGACAGGTGTTTGCTGAGTTTAATAGAATCGCCAGTAAGAATCTTGAGGGAGACTTCTTTGAGGCTCTGGACCAGTATGCCCCACGTTTCATTGAACTTTTCAAAACAAAATAGGGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:1902299 pre-replicative complex assembly involved in cell cycle DNA replication biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0036388 pre-replicative complex assembly biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:1902969 mitotic DNA replication biological_process
GO:0006457 protein folding biological_process
GO:0033260 nuclear DNA replication biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0042555 MCM complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094022

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012771 False 1063 lncRNA 0.44 7 24602410 24606627
TCONS_00013789 True 545 lncRNA 0.44 5 24604380 24606627

Neighbor

gene id symbol gene type direction distance location
XLOC_006618 AL831745.1 coding downstream 14190 24585224 ~ 24588220 (-)
XLOC_006617 NA coding downstream 24388 24577265 ~ 24578022 (-)
XLOC_006616 NA coding downstream 27664 24573086 ~ 24574746 (-)
XLOC_006615 slc1a4 coding downstream 154132 24429918 ~ 24448278 (-)
XLOC_006614 cep68 coding downstream 173315 24421515 ~ 24429095 (-)
XLOC_006621 znf511 coding upstream 58707 24665334 ~ 24669258 (-)
XLOC_006622 erlin1 coding upstream 94779 24701406 ~ 24717618 (-)
XLOC_006623 sfr1 coding upstream 136097 24742724 ~ 24745288 (-)
XLOC_006624 slka coding upstream 174561 24781188 ~ 24826607 (-)
XLOC_006625 AL929334.1 coding upstream 224110 24830737 ~ 24870285 (-)
XLOC_006471 BX537274.2 misc downstream 14337505 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 23776185 825904 ~ 826225 (-)
XLOC_006611 NA non-coding downstream 250867 24346989 ~ 24351543 (-)
XLOC_006607 CR762497.1 non-coding downstream 316020 24283670 ~ 24286390 (-)
XLOC_006629 NA non-coding upstream 603531 25210158 ~ 25284716 (-)
XLOC_006633 BX005252.1 non-coding upstream 923907 25530534 ~ 25530648 (-)
XLOC_006640 NA non-coding upstream 1169762 25776389 ~ 25778815 (-)
XLOC_006643 NA non-coding upstream 1239905 25846532 ~ 25853311 (-)
XLOC_006644 NA non-coding upstream 1402870 26009497 ~ 26703804 (-)

Expression


Co-expression Network