trnas-gcu_15


Basic Information

Item Value
gene id trnas-gcu_15
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1148263 ~ 1148334 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1563
tggggaatagctcagtggtagagcatttgactgctgatcaagaggtccccggttcaaatccgggtgccccct

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1563 True 72 tRNA 0.56 1 1148263 1148334

Neighbor

gene id symbol gene type direction distance location
trnac-gca_91 NA coding downstream 793 1147398 ~ 1147470 (-)
trnac-gca_90 NA coding downstream 1222 1146971 ~ 1147041 (-)
trnac-gca_89 NA coding downstream 1435 1146757 ~ 1146828 (-)
trnac-gca_88 NA coding downstream 1655 1146537 ~ 1146608 (-)
trnac-gca_87 NA coding downstream 3165 1145027 ~ 1145098 (-)
trnac-gca_92 NA coding upstream 370 1148704 ~ 1148774 (-)
trnac-gca_93 NA coding upstream 2864 1151198 ~ 1151268 (-)
trnac-gca_94 NA coding upstream 4527 1152861 ~ 1152931 (-)
trnac-gca_95 NA coding upstream 4971 1153305 ~ 1153376 (-)
trnac-gca_96 NA coding upstream 5621 1153955 ~ 1154025 (-)
G78338 NA non-coding downstream 73807 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 95719 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 98327 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 124453 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 240689 905807 ~ 907574 (-)
G78354 NA non-coding upstream 19988 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 55542 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 63942 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 133398 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 138959 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 173476 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 354127 599107 ~ 794136 (-)
G78170 NA other downstream 692265 453134 ~ 455998 (-)
G78144 alas1 other downstream 699362 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 742852 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 68885 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 440370 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 556290 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1665018 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1671254 2819588 ~ 2830203 (-)

Expression


Co-expression Network