trnac-gca_106


Basic Information

Item Value
gene id trnac-gca_106
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1159413 ~ 1159483 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1578
tggggtatagctcagtggtagagcatttgactgcagatcaagaggtcccggttcaaatccgggtgccccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1578 True 71 tRNA 0.55 1 1159413 1159483

Neighbor

gene id symbol gene type direction distance location
trnac-gca_105 NA coding downstream 150 1159193 ~ 1159263 (-)
trnac-gca_104 NA coding downstream 358 1158984 ~ 1159055 (-)
trnac-gca_103 NA coding downstream 793 1158549 ~ 1158620 (-)
trnac-gca_102 NA coding downstream 1229 1158113 ~ 1158184 (-)
trnac-gca_101 NA coding downstream 1466 1157877 ~ 1157947 (-)
trnac-gca_107 NA coding upstream 361 1159844 ~ 1159915 (-)
trnac-gca_108 NA coding upstream 576 1160059 ~ 1160130 (-)
trnac-gca_109 NA coding upstream 797 1160280 ~ 1160351 (-)
trnac-gca_110 NA coding upstream 1019 1160502 ~ 1160573 (-)
trnac-gca_111 NA coding upstream 1241 1160724 ~ 1160795 (-)
G78339 cnbp,cnbpb,LOC107742030,LOC107742027,LOC107675970,LOC106583855 non-coding downstream 536 1075785 ~ 1158877 (-)
G78338 NA non-coding downstream 84957 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 106869 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 109477 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 135603 1021476 ~ 1023810 (-)
G78354 NA non-coding upstream 8839 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 44393 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 52793 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 122249 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 127810 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 184626 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 365277 599107 ~ 794136 (-)
G78170 NA other downstream 703415 453134 ~ 455998 (-)
G78144 alas1 other downstream 710512 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 754002 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 57736 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 429221 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 545141 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1653869 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1660105 2819588 ~ 2830203 (-)

Expression


Co-expression Network