trnac-gca_117


Basic Information

Item Value
gene id trnac-gca_117
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1163363 ~ 1163434 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1589
gggggtatagctcagtggtagagcatttgactgcagatcaacaggtccccggttcaaatccaggtgccccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1589 True 72 tRNA 0.56 1 1163363 1163434

Neighbor

gene id symbol gene type direction distance location
trnac-gca_116 NA coding downstream 358 1162934 ~ 1163005 (-)
trnac-gca_115 NA coding downstream 1247 1162045 ~ 1162116 (-)
trnac-gca_114 NA coding downstream 1685 1161607 ~ 1161678 (-)
trnac-gca_113 NA coding downstream 2133 1161159 ~ 1161230 (-)
trnac-gca_112 NA coding downstream 2351 1160942 ~ 1161012 (-)
trnac-gca_118 NA coding upstream 149 1163583 ~ 1163654 (-)
trnac-gca_119 NA coding upstream 836 1164270 ~ 1164341 (-)
pdrg1 pdrg1,LOC107730611,LOC107722004,LOC107670939,LOC107654798,LOC107580937,LOC107654789 coding upstream 41685 1205119 ~ 1206837 (-)
fam217bb NA coding upstream 44766 1208200 ~ 1211684 (-)
si:ch73-303b9.1 LOC107654802,LOC107747473,LOC107550334 coding upstream 112933 1276367 ~ 1277356 (-)
G78339 cnbp,cnbpb,LOC107742030,LOC107742027,LOC107675970,LOC106583855 non-coding downstream 4486 1075785 ~ 1158877 (-)
G78338 NA non-coding downstream 88907 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 110819 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 113427 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 139553 1021476 ~ 1023810 (-)
G78354 NA non-coding upstream 4888 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 40442 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 48842 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 118298 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 123859 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 188576 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 369227 599107 ~ 794136 (-)
G78170 NA other downstream 707365 453134 ~ 455998 (-)
G78144 alas1 other downstream 714462 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 757952 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 53785 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 425270 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 541190 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1649918 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1656154 2819588 ~ 2830203 (-)

Expression


Co-expression Network