Gene
RNA
| Item | Value |
|---|---|
| gene id | G81 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 150716 ~ 151207 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU105 | True | 492 | lncRNA | 0.46 | 1 | 150716 | 151207 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000000_00127682_00128077 | NA | coding | upstream | 22639 | 123554 ~ 128077 (+) |
| CI01000000_00121669_00123027 | NA | coding | upstream | 27537 | 121591 ~ 123179 (+) |
| CI01000000_00119500_00121099 | NA | coding | upstream | 29402 | 118549 ~ 121314 (+) |
| CI01000000_00112199_00115163 | NA | coding | upstream | 35360 | 111529 ~ 115356 (+) |
| CI01000000_00108218_00111090 | NA | coding | upstream | 39506 | 107962 ~ 111210 (+) |
| CI01000000_00252240_00259416 | SPON2B, SPON2 | coding | downstream | 101033 | 252240 ~ 259848 (+) |
| CI01000000_00260299_00262433 | NA | coding | downstream | 109092 | 260299 ~ 263524 (+) |
| CI01000000_00264365_00265448 | NA | coding | downstream | 113158 | 264365 ~ 265506 (+) |
| CI01000000_00588173_00605818 | NA | coding | downstream | 436661 | 587868 ~ 606196 (+) |
| CI01000000_00639336_00658655 | NA | coding | downstream | 487945 | 639152 ~ 659048 (+) |
| G74 | NA | non-coding | upstream | 5613 | 144840 ~ 145103 (+) |
| G73 | NA | non-coding | upstream | 6104 | 144396 ~ 144612 (+) |
| G72 | NA | non-coding | upstream | 6566 | 143869 ~ 144150 (+) |
| CI01000000_00050357_00064104 | NA | non-coding | upstream | 87528 | 49997 ~ 64310 (+) |
| G19 | NA | non-coding | upstream | 123082 | 26692 ~ 27634 (+) |
| G87 | NA | non-coding | downstream | 13945 | 165152 ~ 165353 (+) |
| G92 | NA | non-coding | downstream | 21590 | 172797 ~ 244452 (+) |
| G181 | NA | non-coding | downstream | 177265 | 328472 ~ 329274 (+) |
| G182 | NA | non-coding | downstream | 178200 | 329407 ~ 329706 (+) |
| G185 | NA | non-coding | downstream | 181589 | 332796 ~ 333084 (+) |
| G252 | NA | other | downstream | 352002 | 503209 ~ 507072 (+) |
| G350 | NA | other | downstream | 520635 | 671842 ~ 676937 (+) |
| G435 | NA | other | downstream | 1273914 | 1425121 ~ 1432854 (+) |
| G579 | NA | other | downstream | 1664246 | 1767917 ~ 1908808 (+) |
| G2774 | NA | other | downstream | 4302571 | 4453778 ~ 4454232 (+) |
