XLOC_006622 (erlin1)


Basic Information

Item Value
gene id XLOC_006622
gene name erlin1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24701406 ~ 24717618 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012773
aatttatataataaataggCTATTGTAATAATCTTTTATTGTTACTAGGTAATAAAAATAACAGCCATTTCAGtagtagtactactactactaccagtACTACTtctactataaataataataatcatcatcatcaatattatcattacttttttgtttgtttgtttctatgtttttCGTTTTATCCCAGATGgcgacttttattttgaaaggttGTTTGGGCAGATTTTGAAAGGGAATCTGTATCGGATTCACAAAGCGTTTCAGTGGGAACCTTCCAACCTACAATGTTGGGCACAGCGTCGTGAGTAAAAAGTAATGTCTTGCAAAAGTGAAGGGACGGCGTTGTCCGTCAACTGAACGAATGGTCTGTAAATGCTTCCTGCGGCTGCTGCTAGCTCCTCGTATATGTCGTTTAACTTGACAGAAGCTCGTTTTGCCACAAGGTGAGTGCAGACTGAGGGATAATGGCACATGTTGGGGCAGTTGTTGCTGCTATGGCCGGTCTAATGGCCATTCTGCTTCATTCTTCCATACACAAGATCGAGGAAGGACATTTAGCTGTGTATTACAGaggAGGAGCTTTGTTGACCTCTCCAAATGGCCCAGGTTACCATATAATGCTGCCTTTCATCACTTCTTATAGATCAGTGCAGACAACTCTGCAAAcagatgaaataaaaaatgtgccTTGTGGAACTAGTGGGGGTGTAATGATCTATTTTGACAGAATTGAAGTGGTCAACATGCTCATTCCAACCTCAGTGGTGGATATAGTGAGGAATTACACTGCAGATTATGACAAGACGCTAATCTTCAATAAAATTCACCATGAGTTAAACCAGTTCTGCAGTGTGCACACACTACAGGAAGTCTACATTGAGCTGTTCGACATAATTGATGAGAACTTGAAGACTGCACTACAGAAGGACTTGAATTGTATGGCCCCTGGTCTCACCATTCagGCCGTGAGAGTCACCAAACCTAAAATTCCAGAGGCAATCAGAAGAAATTATGAGCTCATGGAAGCAGAGAAGACCAGGCTGCTCATCACCGTTCAGACACAAAAAGTGGTGGAAAAGGAGGCAGAAACTGAAAGAAAGAAGGCCATCATAGAGGCTCAGAAAGTGGCTCAGGTGGCAGAGATTCAGTTCCAACAAAAAGTGATGGAGAAGGAAACTGAGAAAAAGATCTCAGAAATTGAAGATGCTGCTTTCCTGGCGAGAGAGAAGGCACGAGCAGATGCTGAATATTACACCGCTGCAAAATTTGCTGAAGCCAACACGCTCAAGCTCACGCCAGAGTATCTGCAGCTGATGAAGTACCAGGCCATAGCTGCCAACAGCAAGATCTACTTCGGTCAGGACATCCCAAACATGTTTGTAGACAGCAGTGCCTCCCGTCCGGCCGCAGGAGAATCCGAGCAGCTGGAGTCCTTGAGCATGAGAGAGAGTCTTAAGAAAGCGTCCAAGCCCAAAGCCTCAGAAGGCCACTGAAGGGCCTGAGATCTGTCCACCCCcttcttcctctctctctttctctctctctctcattctctgtcTCTTGTTTTGGGGCAGGGGTGCTTGTGAGGCATGCTGACATGGATATTTTCCCTCTTCTGCTGCAGTGGTGTTGGGTGCTTGGCTCGCTGAGGAGACTGACATACAGAGCCTTTGGTTTTCCAGCAGTCATTAGTGGACTAAATGGTAACGTCCAGCAATTGTGCTATTGATTATCGCCAGATTCGAAGCTAAAATGTTCCTGTTTCACATCAGCATGCTTTCTTCCCCCCTTTTTTTGTTGCTCAGCTTTCTCTTCTCTTTTACAGATCCATGCTAATTATTTGTTAGATGCAGATGCGTCTGCGTAAAGTATGTGAACATTTGGAGGTTCATCTTTTGTGTTGTCTTTTGAAACTGGAATTATAAGGCATCACACTAATTAGAAGGCAGTGAgtggcttaaagggatagttgacacaaaagatgttttgaagaaagctgaaaacatgtaaccaataacattccatagtaggaacaacaaatactatggaagtcagtggctaccaGTGTCCACCATTTTTTGGAACTCAAAAAGGTTTTcaacaagtaaatgatgattgagttttgcgtgaactatccctttatataTCTACAATATGATCAAACTCATTTTGCAGCCAAACTGTCATCTTCTTTTTTTCATATGTTGTTAAAGGGATGTTTCACTACACCTCTAAATAGTCATCATTTGTTCATCCTCAAAGCGGTGATGCTTTCTTTTGTGGAACATGAAAAGATAAACTACATTTttcaatatcttttttttttttgtccatacaGTGCAAACCAACAGTCTCCAATGTTGAACTTTGCTTGGATCACTTTGGTTTTAATTAAAtggacaaaaataattaaaaaataataactttgttTCCAAAATAAGTTAAATCCAGTCTGGAATGATGTGAGGATGAGTAAGCAATGACAATATTAAATGTTGGTGAGTAGTCCTTTTGCAAAAGTGCTCATGTCCATCATCACTAACTTGATAAGCACTAAAATCTTAATTTAGTTGAGCCAAGACTGCAAAGATCAGCGGCttttatatgttattaattaTAATTCTGATTATTATATGTTTGTAAGAATGATCTCATTTTAAAATCATCCCTTGCTTGAGTTTTGTTGGTCTTCAAGATGAAGATTTTTGACATCATTGACGCCTGAATACTTTTGTTGTGAATTGGATTTCATGTAATGTCAGAAATAGTGGGTTGTGGTATAGTGTTGTGTAGCATGTTCATTTGTGGCGGCCCTGTGGATTTTTCAAGTTGTTGGGTTCATACTGAACAGGGTTTCATACAATTTCAGATTTCATTTTCCAGGGCTTTGACAAGCAATGAGATTGGATTGCTTTCGGATGGTCGTGTATATATAGTGTAGTGACTAACAAATGCCTTTCTGACTTTAGTTGAACTTGTTTATTTGGTCATTACTGGAATGAGTTTATTTCAAAGGGAATTCAGTAACAATAAGGGCTGCTGTATTATTAGGCACTGTCAAACATTTAGCATTATGATGAGCGGGTGTTTATACTGAGAAGTGTCACCACTAGGGGAAGCCAGTGATCTTCAGGAACTACAAGAGTAGGCAACAAACAGTTAAAAAACGTTGTGGTTTAGCTTTTCTTGGAAGTTGTCAAATCTGTATAAGTTGCAGTCATATGCCAATAATAGCAATGCATTGCATCAAATCATTTCGAATAGCGTCTGTCAGTACTATCTCAGGAAAAGAGACCTGCGTGTTAACTTGAATGgcctgtttttttctttcttagaaAACAATATAAACTTGACTGAAATTTGAGTCGGGTgtcagtttgtgttgattgtgtGAATCTGTCACACGACATGTTGATTTTTCATCATTTGCAGACTGGTCGATTAAAGAGATGAGCACTGATTTAATACAGTTAGTCCGATTGTTGATGCTACATCCTGTTGCTTTTGCCATTTtcccttttaaagggatagttcacccaaaattctgtcatttacttgtgCTCCTAAttgagtttgtttcttcttttgAATACACAAATGAAGAAACACTGAGGAATGTTGAAATAAAACAGCCATTGAATtccataatagtttttttttttactatggatttCTGTGACTGCTTTCTCctctcaacattcttcagaatatcttgttttgtgttcaactgaagataGAAATTcctaaaggtttagaaccacttaaatGTGAGCAAATGATGAGGAAACGtcaatttttgggtgagctatcccttaaGTTTGACTTTATCCATGGTTTTGCTTTAGAGTGTGAATATGACTGTCTTAAAGCGATGTGTTCCCTGTGGTTGTTAAATGGAGAGAGGACAGACTTTGACTGCCCTGGAATAAACCCACTCTGTGAATGTCACTTTTTTATGTCAGCGTAATTTAAGCTcctaattttaaaacatttatatgcaaaatttataaaattttgaCAATGTTCAATTCTGTGAAATAAAACCTATTTTGATACCATGAAAACGACGCTTGTGTGATCATATTCCTTCACATTAGGGAAGTGCACTTCATGTCCTATTAAGGAAGTGTTTCACATAGCTTTATGTCATAGATTGTGTCACGATTAATTGTGTTGTAGTTTGGTTTGAGCTATTTTCCAAGAAATATAGAGGAATAGGAAATAGATCTCATCTTTCATATGTAAGAAGTGcggtataaaaatataaatttaagtatATGCCAAACTTGGCCCTTGGTTTTTGTTGCCTGCTTGACGGAGTGTGAGAAAGTCTCACTGTTGTTTGTGTATTTGACCCTAGACAATCAAACCAGTCTTAAGTTGCATGGGTTTATATAAGAGTAGCCAACAATGAAA
>TCONS_00012774
GAAAGGGAATCTGTATCGGATTCACAAAGCGTTTCAGTGGGAACCTTCCAACCTACAATGTTGGGCACAGCGTCGTGAGTAAAAAGTGAGTGCAGACTGAGGGATAATGGCACATGTTGGGGCAGTTGTTGCTGCTATGGCCGGTCTAATGGCCATTCTGCTTCATTCTTCCATACACAAGATCGAGGAAGGACATTTAGCTGTGTATTACAGaggAGGAGCTTTGTTGACCTCTCCAAATGGCCCAGGTTACCATATAATGCTGCCTTTCATCACTTCTTATAGATCAGTGCAGACAACTCTGCAAAcagatgaaataaaaaatgtgccTTGTGGAACTAGTGGGGGTGTAATGATCTATTTTGACAGAATTGAAGTGGTCAACATGCTCATTCCAACCTCAGTGGTGGATATAGTGAGGAATTACACTGCAGATTATGACAAGACGCTAATCTTCAATAAAATTCACCATGAGTTAAACCAGTTCTGCAGTGTGCACACACTACAGGAAGTCTACATTGAGCTGTTCGACATAATTGATGAGAACTTGAAGACTGCACTACAGAAGGACTTGAATTGTATGGCCCCTGGTCTCACCATTCagGCCGTGAGAGTCACCAAACCTAAAATTCCAGAGGCAATCAGAAGAAATTATGAGCTCATGGAAGCAGAGAAGACCAGGCTGCTCATCACCGTTCAGACACAAAAAGTGGTGGAAAAGGAGGCAGAAACTGAAAGAAAGAAGGCCATCATAGAGGCTCAGAAAGTGGCTCAGGTGGCAGAGATTCAGTTCCAACAAAAAGTGATGGAGAAGGAAACTGAGAAAAAGATCTCAGAAATTGAAGATGCTGCTTTCCTGGCGAGAGAGAAGGCACGAGCAGATGCTGAATATTACACCGCTGCAAAATTTGCTGAAGCCAACACGCTCAAGCTCACGCCAGAGTATCTGCAGCTGATGAAGTACCAGGCCATAGCTGCCAACAGCAAGATCTACTTCGGTCAGGACATCCCAAACATGTTTGTAGACAGCAGTGCCTCCCGTCCGGCCGCAGGAGAATCCGAGCAGCTGGAGTCCTTGAGCATGAGAGAGAGTCTTAAGAAAGCGTCCAAGCCCAAAGCCTCAGAAGGCCACTGAAGGGCCTGAGATCTGTCCACCCCcttcttcctctctctctttctctctctctctcattctctgtcTCTTGTTTTGGGGCAGGGGTGCTTGTGAGGCATGCTGACATGGATATTTTCCCTCTTCTGCTGCAGTGGTGTTGGGTGCTTGGCTCGCTGAGGAGACTGACATACAGAGCCTTTGGTTTTCCAGCAGTCATTAGTGGACTAAATGGTAACGTCCAGCAATTGTGCTATTGATTATCGCCAGATTCGAAGCTAAAATGTTCCTGTTTCACATCAGCATGCTTTCTTCCCCCCTTTTTTTGTTGCTCAGCTTTCTCTTCTCTTTTACAGATCCATGCTAATTATTTGTTAGATGCAGATGCGTCTGCGTAAAGTATGTGAACATTTGGAGGTTCATCTTTTGTGTTGTCTTTTGAAACTGGAATTATAAGGCATCACACTAATTAGAAGGCAGTGAgtggcttaaagggatagttgacacaaaagatgttttgaagaaagctgaaaacatgtaaccaataacattccatagtaggaacaacaaatactatggaagtcagtggctaccaGTGTCCACCATTTTTTGGAACTCAAAAAGGTTTTcaacaagtaaatgatgattgagttttgcgtgaactatccctttatataTCTACAATATGATCAAACTCATTTTGCAGCCAAACTGTCATCTTCTTTTTTTCATATGTTGTTAAAGGGATGTTTCACTACACCTCTAAATAGTCATCATTTGTTCATCCTCAAAGCGGTGATGCTTTCTTTTGTGGAACATGAAAAGATAAACTACATTTttcaatatcttttttttttttgtccatacaGTGCAAACCAACAGTCTCCAATGTTGAACTTTGCTTGGATCACTTTGGTTTTAATTAAAtggacaaaaataattaaaaaataataactttgttTCCAAAATAAGTTAAATCCAGTCTGGAATGATGTGAGGATGAGTAAGCAATGACAATATTAAATGTTGGTGAGTAGTCCTTTTGCAAAAGTGCTCATGTCCATCATCACTAACTTGATAAGCACTAAAATCTTAATTTAGTTGAGCCAAGACTGCAAAGATCAGCGGCttttatatgttattaattaTAATTCTGATTATTATATGTTTGTAAGAATGATCTCATTTTAAAATCATCCCTTGCTTGAGTTTTGTTGGTCTTCAAGATGAAGATTTTTGACATCATTGACGCCTGAATACTTTTGTTGTGAATTGGATTTCATGTAATGTCAGAAATAGTGGGTTGTGGTATAGTGTTGTGTAGCATGTTCATTTGTGGCGGCCCTGTGGATTTTTCAAGTTGTTGGGTTCATACTGAACAGGGTTTCATACAATTTCAGATTTCATTTTCCAGGGCTTTGACAAGCAATGAGATTGGATTGCTTTCGGATGGTCGTGTATATATAGTGTAGTGACTAACAAATGCCTTTCTGACTTTAGTTGAACTTGTTTATTTGGTCATTACTGGAATGAGTTTATTTCAAAGGGAATTCAGTAACAATAAGGGCTGCTGTATTATTAGGCACTGTCAAACATTTAGCATTATGATGAGCGGGTGTTTATACTGAGAAGTGTCACCACTAGGGGAAGCCAGTGATCTTCAGGAACTACAAGAGTAGGCAACAAACAGTTAAAAAACGTTGTGGTTTAGCTTTTCTTGGAAGTTGTCAAATCTGTATAAGTTGCAGTCATATGCCAATAATAGCAATGCATTGCATCAAATCATTTCGAATAGCGTCTGTCAGTACTATCTCAGGAAAAGAGACCTGCGTGTTAACTTGAATGgcctgtttttttctttcttagaaAACAATATAAACTTGACTGAAATTTGAGTCGGGTgtcagtttgtgttgattgtgtGAATCTGTCACACGACATGTTGATTTTTCATCATTTGCAGACTGGTCGATTAAAGAGATGAGCACTGATTTAATACAGTTAGTCCGATTGTTGATGCTACATCCTGTTGCTTTTGCCATTTtcccttttaaagggatagttcacccaaaattctgtcatttacttgtgCTCCTAAttgagtttgtttcttcttttgAATACACAAATGAAGAAACACTGAGGAATGTTGAAATAAAACAGCCATTGAATtccataatagtttttttttttactatggatttCTGTGACTGCTTTCTCctctcaacattcttcagaatatcttgttttgtgttcaactgaagataGAAATTcctaaaggtttagaaccacttaaatGTGAGCAAATGATGAGGAAACGtcaatttttgggtgagctatcccttaaGTTTGACTTTATCCATGGTTTTGCTTTAGAGTGTGAATATGACTGTCTTAAAGCGATGTGTTCCCTGTGGTTGTTAAATGGAGAGAGGACAGACTTTGACTGCCCTGGAATAAACCCACTCTGTGAATGTCACTTTTTTATGTCAGCGTAATTTAAGCTcctaattttaaaacatttatatgcaaaatttataaaattttgaCAATGTTCAATTCTGTGAAATAAAACCTATTTTGATACCATGAAAA
>TCONS_00012775
ACAAAGCGTTTCAGTGGGAACCTTCCAACCTACAATGTTGGGCACAGCGTCGTGAGTAAAAAGTAATGTCTTGCAAAAGTGAAGGGACGGCGTTGTCCGTCAACTGAACGAATGGTCTGTAAATGCTTCCTGCGGCTGCTGCTAGCTCCTCGTATATGTCGTTTAACTTGACAGAAGCTCGTTTTGCCACAAGGTGAGTGCAGACTGAGGGATAATGGCACATGTTGGGGCAGTTGTTGCTGCTATGGCCGGTCTAATGGCCATTCTGCTTCATTCTTCCATACACAAGATCGAGGAAGGACATTTAGCTGTGTATTACAGaggAGGAGCTTTGTTGACCTCTCCAAATGGCCCAGGTTACCATATAATGCTGCCTTTCATCACTTCTTATAGATCAGTGCAGACAACTCTGCAAAcagatgaaataaaaaatgtgccTTGTGGAACTAGTGGGGGTGTAATGATCTATTTTGACAGAATTGAAGTGGTCAACATGCTCATTCCAACCTCAGTGGTGGATATAGTGAGGAATTACACTGCAGATTATGACAAGACGCTAATCTTCAATAAAATTCACCATGAGTTAAACCAGTTCTGCAGTGTGCACACACTACAGGAAGTCTACATTGAGCTGTTCGACATAATTGATGAGAACTTGAAGACTGCACTACAGAAGGACTTGAATTGTATGGCCCCTGGTCTCACCATTCagGCCGTGAGAGTCACCAAACCTAAAATTCCAGAGGCAATCAGAAGAAATTATGAGCTCATGGAAGCAGAGAAGACCAGGCTGCTCATCACCGTTCAGACACAAAAAGTGGTGGAAAAGGAGGCAGAAACTGAAAGAAAGAAGGCCATCATAGAGGCTCAGAAAGTGGCTCAGGTGGCAGAGATTCAGTTCCAACAAAAAGTGATGGAGAAGGAAACTGAGAAAAAGATCTCAGAAATTGAAGATGCTGCTTTCCTG

Function

symbol description
erlin1 Predicted to enable cholesterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to act upstream of or within cholesterol metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 62. Orthologous to human ERLIN1 (ER lipid raft associated 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008202 steroid metabolic process biological_process
GO:0032933 SREBP signaling pathway biological_process
GO:0008203 cholesterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-13 Predicted to enable cholesterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to act upstream of or within cholesterol metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 62. Orthologous to human ERLIN1 (ER lipid raft associated 1).

Ensembl:

ensembl_id ENSDARG00000021991

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012773 False 4419 mRNA 0.38 12 24701406 24717618
TCONS_00012774 False 3706 mRNA 0.39 12 24701758 24717388
TCONS_00012775 True 967 mRNA 0.44 11 24706818 24717365

Neighbor

gene id symbol gene type direction distance location
XLOC_006621 znf511 coding downstream 32148 24665334 ~ 24669258 (-)
XLOC_006619 NA coding downstream 78181 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 coding downstream 94779 24602410 ~ 24606627 (-)
XLOC_006618 AL831745.1 coding downstream 113186 24585224 ~ 24588220 (-)
XLOC_006617 NA coding downstream 123384 24577265 ~ 24578022 (-)
XLOC_006623 sfr1 coding upstream 25106 24742724 ~ 24745288 (-)
XLOC_006624 slka coding upstream 63570 24781188 ~ 24826607 (-)
XLOC_006625 AL929334.1 coding upstream 113119 24830737 ~ 24870285 (-)
XLOC_006626 kat6b coding upstream 153432 24871050 ~ 24880525 (-)
XLOC_006627 kat6b coding upstream 163654 24881272 ~ 24906307 (-)
XLOC_006471 BX537274.2 misc downstream 14436501 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 23875181 825904 ~ 826225 (-)
XLOC_006616 NA non-coding downstream 126660 24573086 ~ 24574746 (-)
XLOC_006629 NA non-coding upstream 492540 25210158 ~ 25284716 (-)
XLOC_006633 BX005252.1 non-coding upstream 812916 25530534 ~ 25530648 (-)
XLOC_006640 NA non-coding upstream 1058771 25776389 ~ 25778815 (-)
XLOC_006643 NA non-coding upstream 1128914 25846532 ~ 25853311 (-)
XLOC_006644 NA non-coding upstream 1291879 26009497 ~ 26703804 (-)

Expression


Co-expression Network