trnaf-gaa_74


Basic Information

Item Value
gene id trnaf-gaa_74
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2970195 ~ 2970266 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1781
ggcgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatccgGGTTTcggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1781 True 72 tRNA 0.53 1 2970195 2970266

Neighbor

gene id symbol gene type direction distance location
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 158831 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 183249 2786874 ~ 2786946 (-)
trnaf-gaa_28 NA coding downstream 183408 2786710 ~ 2786787 (-)
trnaf-gaa_27 NA coding downstream 184975 2785148 ~ 2785220 (-)
trnap-cgg_6 NA coding downstream 185581 2784543 ~ 2784614 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding upstream 26233 2996499 ~ 3037108 (-)
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding upstream 82430 3052696 ~ 3058430 (-)
LOC122354702 NA coding upstream 85431 3055697 ~ 3055773 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 286613 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 315695 3285961 ~ 3299062 (-)
LOC122354391 NA non-coding downstream 170167 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 174899 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 269466 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 272723 2697228 ~ 2697472 (-)
G78769 NA non-coding downstream 273498 2696409 ~ 2696697 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding upstream 108748 3079014 ~ 3079668 (-)
G78854 NA non-coding upstream 144031 3114297 ~ 3114570 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 253469 3223735 ~ 3241319 (-)
G78903 NA non-coding upstream 260861 3231127 ~ 3232742 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 295918 3266184 ~ 3266672 (-)
trnap-cgg_23 NA other downstream 522 2969602 ~ 2969673 (-)
trnaf-gaa_73 NA other downstream 1484 2968641 ~ 2968711 (-)
trnaf-gaa_72 NA other downstream 3026 2967098 ~ 2967169 (-)
trnaf-gaa_71 NA other downstream 4592 2965531 ~ 2965603 (-)
trnap-cgg_22 NA other downstream 5196 2964928 ~ 2964999 (-)
trnap-cgg_24 NA other upstream 903 2971169 ~ 2971240 (-)
trnaf-gaa_75 NA other upstream 5250 2975516 ~ 2975588 (-)
trnap-cgg_25 NA other upstream 6216 2976482 ~ 2976553 (-)
trnaf-gaa_76 NA other upstream 6805 2977071 ~ 2977143 (-)
trnap-cgg_26 NA other upstream 7769 2978035 ~ 2978106 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaf-gaa NA coding NC_048567.1 CM023221.2 39393641 ~ 39393713 (+)
striped catfish (Pangasianodon hypophthalmus) trnaf-gaa NA coding NC_047595.1 CM018541.1 29989218 ~ 29989290 (-)
mexican tetra (Astyanax mexicanus) trnaf-gaa NA coding NC_035902.1 CM008305.1 6474779 ~ 6474850 (-)