Gene
RNA
| Item | Value |
|---|---|
| gene id | G318 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 574063 ~ 574309 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU391 | True | 247 | lncRNA | 0.30 | 1 | 574063 | 574309 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000000_00264365_00265448 | NA | coding | upstream | 308557 | 264365 ~ 265506 (+) |
| CI01000000_00260299_00262433 | NA | coding | upstream | 310539 | 260299 ~ 263524 (+) |
| CI01000000_00252240_00259416 | SPON2B, SPON2 | coding | upstream | 314215 | 252240 ~ 259848 (+) |
| CI01000000_00127682_00128077 | NA | coding | upstream | 445986 | 123554 ~ 128077 (+) |
| CI01000000_00121669_00123027 | NA | coding | upstream | 450884 | 121591 ~ 123179 (+) |
| CI01000000_00588173_00605818 | NA | coding | downstream | 13559 | 587868 ~ 606196 (+) |
| CI01000000_00639336_00658655 | NA | coding | downstream | 64843 | 639152 ~ 659048 (+) |
| CI01000000_00678887_00679319 | NA | coding | downstream | 104403 | 678712 ~ 680447 (+) |
| CI01000000_00753279_00782484 | PPP3CA, PPP3CB | coding | downstream | 178970 | 753279 ~ 782484 (+) |
| CI01000000_00814932_00820795 | NA | coding | downstream | 240623 | 814932 ~ 820875 (+) |
| G317 | NA | non-coding | upstream | 665 | 573092 ~ 573398 (+) |
| G316 | NA | non-coding | upstream | 1109 | 572537 ~ 572954 (+) |
| G315 | NA | non-coding | upstream | 1542 | 572301 ~ 572521 (+) |
| G312 | NA | non-coding | upstream | 7107 | 566597 ~ 566956 (+) |
| G309 | NA | non-coding | upstream | 9785 | 564008 ~ 564278 (+) |
| G330 | NA | non-coding | downstream | 36033 | 610342 ~ 610542 (+) |
| G333 | NA | non-coding | downstream | 42737 | 617046 ~ 617325 (+) |
| G334 | NA | non-coding | downstream | 43204 | 617513 ~ 617792 (+) |
| G336 | NA | non-coding | downstream | 53300 | 627609 ~ 627873 (+) |
| G252 | NA | other | upstream | 66991 | 503209 ~ 507072 (+) |
| G350 | NA | other | downstream | 97533 | 671842 ~ 676937 (+) |
| G435 | NA | other | downstream | 850812 | 1425121 ~ 1432854 (+) |
| G579 | NA | other | downstream | 1241144 | 1767917 ~ 1908808 (+) |
| G2774 | NA | other | downstream | 3879469 | 4453778 ~ 4454232 (+) |
| G2850 | NA | other | downstream | 4151677 | 4725986 ~ 4726482 (+) |
