G10219 (pbx1a,pbx1b,LOC107677498,LOC108272157,LOC107564502)


Basic Information

Item Value
gene id G10219
gene name pbx1a,pbx1b,LOC107677498,LOC108272157,LOC107564502
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8219265 ~ 8262830 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU15209
CCTGCTCATACTTCTCAAGCTCTGTATGGTAGATCTGACGGATCTGGGACAGCTTGGCCCGGTAATCCGAGTGTTCGGCCGAGTTATCGGACCCACCGCCGCCTGCCGCAGCAGCCGCAGCCGCAGCCGCGGCCGAACCGCCCCCTTTCTCCGGTCCGGACACACCCTCCGCTAGCAGCATGTTGTCCAATCGCATGAGTTGAGCGTCCGGTGGCTCCTCCTCCTGAGCGCCACGGATACTGAGGACTGtttttttcttttatttcgcACAGGACGTTGAACAGAGCCGGCTTCATTCTGTGACAATTCAGTGCATGTTtc

Function

symbol description
pbx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hemopoiesis; swim bladder morphogenesis; and vasculature development. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; head; pleuroperitoneal region; presumptive swim bladder; and swim bladder bud. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma. Orthologous to human PBX1 (PBX homeobox 1).
pbx1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma. Orthologous to human PBX1 (PBX homeobox 1).

NR:

description
pre-B-cell leukemia homeobox 1a isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15209 True 321 lncRNA 0.58 2 8219265 8262830

Neighbor

gene id symbol gene type direction distance location
ptger4c ptger4c,LOC107716941,LOC107700513,LOC107743379,LOC107684935,LOC107564388,LOC107551710 coding upstream 828230 7388418 ~ 7391035 (+)
dmbx1a dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107551711,LOC107684938,LOC108442545 coding upstream 872610 7340271 ~ 7346655 (+)
wls wls,LOC107684934 coding upstream 935455 7269715 ~ 7283810 (+)
scinlb LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC108280481,LOC106568976 coding upstream 950860 7257164 ~ 7268405 (+)
ccdc18 ccdc18,LOC107716953,LOC107658134,LOC107568077 coding upstream 964694 7236939 ~ 7254571 (+)
glula LOC107563291,LOC107710552,LOC107700548,LOC107732203,LOC107553252 coding downstream 52301 8315131 ~ 8318467 (+)
elovl1a elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025 coding downstream 110408 8373238 ~ 8382443 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding downstream 124047 8386877 ~ 8403214 (+)
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding downstream 177049 8439879 ~ 8486904 (+)
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding downstream 327411 8590241 ~ 8599595 (+)
G10198 NA non-coding upstream 128729 8081817 ~ 8090536 (+)
G10200 NA non-coding upstream 129794 8083536 ~ 8089471 (+)
LOC122326720 NA non-coding upstream 188158 8027750 ~ 8031107 (+)
G10188 NA non-coding upstream 263059 7955793 ~ 7956206 (+)
G10183 NA non-coding upstream 336788 7874483 ~ 7882477 (+)
G10226 NA non-coding downstream 259572 8522402 ~ 8528707 (+)
G10271 NA non-coding downstream 297268 8560098 ~ 8561513 (+)
G10284 LOC107710615 non-coding downstream 324547 8587377 ~ 8589074 (+)
LOC122356731 NA non-coding downstream 500009 8762839 ~ 8765451 (+)
G10371 NA non-coding downstream 535761 8798591 ~ 8798996 (+)
G10212 NA other upstream 111488 8106865 ~ 8107777 (+)
G10108 NA other upstream 636880 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 919164 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1113473 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 1232146 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 899781 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 1483740 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 1648798 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1895702 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 2399899 10662729 ~ 10665110 (+)

Expression


Co-expression Network