G10284 (LOC107710615)


Basic Information

Item Value
gene id G10284
gene name LOC107710615
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8587377 ~ 8589074 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU15317
TTGCTGTTTCACGATGATTCTCCGCCATCATCCTCAGGACTTCATCCTTAATGGATCTGACAACAGGTTGCTCGTcgagctgtccctttaaatgttcATCACGGACAAGGACCCTCTCCACCACCGTCCCGTCCACCAAAACACTGCGCTCGAATTGAACGCAGACGTCCCTCGGAAGAGCCCGGCATAAATGTACGAGAAAAGCGAAGGTTACGAAGAGGAGCATTTCTGCGCGATGTGGAGCGAAGGCGGCGATGGGTACGGTTTGTTTTGAATCGATGTATTTCTTTCGGTTTCTATTTGTCGCATTATCATTCACGCCTCGCGGCTTTTATAAACGAAACAAGACGACTGGAGCGGGCAAAATATCCCGAGCTGGCGCAAAACCGTCGCGCGCAGCGAGCAGGTTAAACATGTAGTAGACGGTAAGAGCTCTTGCGTGTCATTGGCTGTTACCAGGAGAAACTGA
>TU15319
CTTCTTGATTTTGGTTGTCGTTCATCTGTTTAATGAATGCCTCACATTCTTCCTTCAGGTGAATTTTCTCTAGACTCGCATGCTCCACTTTAAAAGTCCACAGTTTCTCCAGATCCTGCGCCTCTGGCATCAACGCTGTCCACGAATCGCTGTCTGAATCTAAAGACAGATAATCTGTGCCATTGAGCTGAAACCTGTCAGACAGCTGCAGGACTTGATATCCTCGCAGTCTGCATTCCCTCAAACGCATGTATGTCCCATAACCCCTCGGAAGAGCCCGGCATAAATGTACGAGAAAAGCGAAGGTTACGAAGAGGAGCATTTCTGCGCGATGTGGAGCGAAGGCGGCGATGGGTACGGTTTGTTTTGAATCGATGTATTTCTTTCGGTTTCTATTTGTCGCATTATCATTCACGCCTCGCGGCTTTTATAAACGAAACAAGACGACTGGAGCGGGCAAAATATCCCGAGCTGGCGCAAAACCGTCGCGCGCAGCGAGCAGGTTAAACATGTAGTAGACGGTAAGAGCTCTTGCGTGTCATTGGCTGTTACCAGGAGAAACTGA
>TU15324
GCTAAAACACCGATGCTTGTTTCACTCTTACTGAATAACTTTTTCTGGCGAATTATGCAATCAACAAGTGCACGTGTGCGGACAGCTAAAATGTTTTGGACAATACAAATGTTCTTTGCTCTGTGTGTACAACGAACGCGTTACGATTAGTGAcctaaattttagtttttgtattaaatacaaaGCAATTCGCACTAAAAATGACACGCAGACGGGGTTCATGCAGTTAATGAGCTCAACAAGATGTGAATGATTATAACGCAGCACCGTACAATATAGAAATTATTATTCGTGTTTTGAAAAATCCAAACGGCTCAATAATCTCACTTTGAATGGGCACGACGCCTTTGgttatcttttatatatataatcagcaccgttaattttttttactgttcctTATCTACCGCTAAACTTCATAAATTGTTGCATTAAGATATTATTTACTTGCTGTTTCACGATGATTCTCCGCCATCATCCTCAGGACTTCATCCTTAATGGATCTGACAACAGGTTGCTCGTcgagctgtccctttaaatgttcATCACGGACAAGGACCCTCTCCACCACCGTCCCGTCCACCAAAACACTGCGCTCGAATTGAACGCAGACGTCCCTCGGAAGAGCCCGGCATAAATGTACGAGAAAAGCGAAGGTTACGAAGAGGAGCATTTCTGCGCGATGTGGAGCGAAGGCGGCGATGGGTACGGTTTGTTTTGAATCGATGTATTTCTTTCGGTTTCTATTTGTCGCATTATCATTCACGCCTCGCGGCTTTTATAAACGAAACAAGACGACTGGAGCGGGCAAAATATCCCGAGCTGGCGCAAAACCGTCGCGCGCAGCGAGCAGGTTAAACATGTAGTAGACGGTAAGAGCTCTTGCGTGTCATTGGCTGTTACCAGGAGAAACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15317 False 469 lncRNA 0.51 2 8588495 8589074
TU15319 False 565 lncRNA 0.48 2 8587377 8589074
TU15324 True 916 lncRNA 0.63 2 8588048 8589074

Neighbor

gene id symbol gene type direction distance location
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding upstream 100473 8439879 ~ 8486904 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding upstream 184163 8386877 ~ 8403214 (+)
elovl1a elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025 coding upstream 204934 8373238 ~ 8382443 (+)
glula LOC107563291,LOC107710552,LOC107700548,LOC107732203,LOC107553252 coding upstream 268910 8315131 ~ 8318467 (+)
ptger4c ptger4c,LOC107716941,LOC107700513,LOC107743379,LOC107684935,LOC107564388,LOC107551710 coding upstream 1196342 7388418 ~ 7391035 (+)
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding downstream 1167 8590241 ~ 8599595 (+)
atr atr,LOC107677746,LOC107700496 coding downstream 41338 8630412 ~ 8651546 (+)
amer3 LOC107710619,LOC107700565,LOC107677756,LOC107732953,LOC107553265,LOC107569737 coding downstream 62843 8651917 ~ 8662323 (+)
LOC122361595 LOC107710620 coding downstream 241746 8830820 ~ 8841734 (+)
LOC122359011 arhgef4,LOC107700563,LOC107710620,LOC107553266,LOC107732940 coding downstream 259253 8848327 ~ 8878100 (+)
G10271 NA non-coding upstream 25864 8560098 ~ 8561513 (+)
G10226 NA non-coding upstream 58670 8522402 ~ 8528707 (+)
G10219 pbx1a,pbx1b,LOC107677498,LOC108272157,LOC107564502 non-coding upstream 324547 8219265 ~ 8262830 (+)
G10198 NA non-coding upstream 496841 8081817 ~ 8090536 (+)
G10200 NA non-coding upstream 497906 8083536 ~ 8089471 (+)
LOC122356731 NA non-coding downstream 173765 8762839 ~ 8765451 (+)
G10371 NA non-coding downstream 209517 8798591 ~ 8798996 (+)
G10374 NA non-coding downstream 290868 8879942 ~ 8880453 (+)
G10431 NA non-coding downstream 340430 8929504 ~ 8930073 (+)
G10433 NA non-coding downstream 350895 8939969 ~ 8941186 (+)
G10212 NA other upstream 479600 8106865 ~ 8107777 (+)
G10108 NA other upstream 1004992 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1287276 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1481585 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 1600258 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 573537 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 1157496 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 1322554 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1569458 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 2073655 10662729 ~ 10665110 (+)

Expression


Co-expression Network