G10562


Basic Information

Item Value
gene id G10562
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9457163 ~ 9461084 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU15709
CTGTCCCTCTCTCACACTCCTGCTTTTCCTCcctcccactctctctctctctaactccCTCGCTCCTCTCATCCTCCTGTGACTTAGTTTGCCGTGcgcaacaactggcagacgtcTCTCCTGTTCTCCGGCGAGGTGGAGAGCTTGTTCGGAAGGAGATCCTGCATGTTTGGGCACATGGTCTTACGGCAGCGACGGATCGGCAGCACAACAACCTGAAGGAACGGCATCCTCAGCCTTCCCCGTCACTGCCGGCTCAAGGCAGCGGACGAATGGGCGGCTTTGTGCTCAGCGGGTGCCGCTCTATAGAGATCTCTAGGATCTGGCCTGGATGTTTGCGAGCGCTTCCTCCCCCAGAGGCCGGGCTGGACTCGAGGACAGGACGTGAGGTCCGTGAGCACCAGATGCAACCTTTGATGGGGGCCTTGCCTTGTGGTAAAGGGCATCTTCAATCAATTCCCCTAGAGAGAAAACTCTGCTTTGGCCTATGCCACTGTGGATGGCTGAAAGTCAGGCGAAGCCCCCTTTTACTAAGGCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCATTGTCGACTGTCTTCGCGGAGATAACCTCCACTGGTTCCAAAAACCTTCTGGCTTTGCACTGTGGCCGTTTAGATTTTCACTGTGGTTCGTTTGATTTCTGCAACAGGAGACAGACAGCTCTTGCTCTCGTTGGATTGTCTCCACCTACATTGGCAAAGCGCCGCTTTATGCACCGCATTCCAACAAGCGGCATTTCGCAcaacttgtttgtttattgttttgtgtttttcatctgAGTATGCGTGCAAAGGGGGCGGTTCACGGGGAACAGCGATATTTTTGCTCTCTTCGGGGAGTGTTTTAGCGTACACATGCCTGCTTGCCTGGCTGGTAGGAATGCATTTACTGCTCTTTATTGTTAGTCCCGAGCACCAGCGGGAGCCCCGGACTGCATGGGGTGTTCACACAGATTGATTTTGAGATGGCATTAGGCGTACAGTTTTTACTATTCAGCTGACAGCGATGGGAGGCAAAATGTCCACGGCATCTAAGAGGCTTTGCTATGAAAGGGGAGGGGCTTCAAGTCTAATTACGAAACGCAACTAAGCAGAAGCAGCATAATAGATTACACGAACGTATCTACTGGGCTCACAGCATCAGCTGTTTCCTTCTGATTGTAGGACAGTTTCTCAGGACAAAAACTGattgaatatcttttttttctcctagaTAAAGACACACGTTCACATAATGTTCTTTTCCAAACCgctaattactttttaatgatgCGCTCAAATGTCTGAGTTAGCTTGTGCTGGTGAAAGCCAATGAGGCCTGTGGCGTATAAAGATGGCcagtgtttttaaagcagtCATATCTTTCTCTCAGAGCATGCTACTTGTATAATATTTAACCAAACAATTTTCTGAATGCATTTAAGATTAACCTGAAGACTATTTTTAATACCTTGTTTGTATAAACGTAAGATTTTACTAAAGGACTGGcaattttagatgaaaaaaataccaaaacaaaaaaaaaaacactttttaattatttataaataattttgtgtggGTTACAATTTAATTGTTATACAGAACTGTAAACGCAGAGcttatttctttcattctctgcttttaaaaaaggtCTGGAAGGCATACAGGCAAAATGTAAATTGGCTGCTACTCTGTTTTAGTCACATTAGCCACAGAGCTTGTGAAAATAACTAGAGGCTTATTAGAAATGCTCATGAAAAGACCCCATCAGCAGACACAAAgcatattacttatattattatgtaatctAATGATATAATGCTGATATTATACATATCACAAGGTTATATcaatgattattatattatattattctttaCTTTATTACTGTCACTCTGTCATTTTTTGTTACTTGTGCAcattcaatgtatttttcactgtaattGCATTTCACTCAAAATGAGTGTTTATTGAATGATTTTATCTGACACTGAATGTGCCGTTATCATTAAGTCATGGCAAATGTTGTATCCAATGACAATTTGAAGCCCTAAATAAACTCTCTATAAAAAAGTGCGGAACATTGTTATGAATTTGTCATGACTTGAGTGAGTTTACTCTGCCTTCCCCCtgtttcctctctctgtgttaATAGCTTTCATACACCTGTATCCGTGCAGGTGTTTTCCTCTTTATGATTACCTCTCCCACCCACCGAGCTAATTTCAgctttggaagaaaaaa

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU15709 True 2303 lncRNA 0.43 3 9457163 9461084

Neighbor

gene id symbol gene type direction distance location
dpydb dpyd,dpydb,LOC107677757,LOC107718148 coding downstream 10381 9346029 ~ 9446782 (-)
cnn3b cnn3b,cnn3,LOC107680046,LOC107730489,LOC107570492 coding downstream 186066 9263194 ~ 9271097 (-)
f3b f3,LOC107730491,LOC107564531,LOC107680051 coding downstream 206194 9248600 ~ 9250969 (-)
arhgap29b arhgap29,LOC107745695,LOC107564532,LOC107680050 coding downstream 218214 9212459 ~ 9238949 (-)
amy2a amy2a,LOC107700520,LOC103353956 coding downstream 398061 9055723 ~ 9059102 (-)
frrs1a LOC107693701,LOC107722512,LOC107594678 coding upstream 109507 9570591 ~ 9577749 (-)
dusp12 dusp12,LOC107722526,LOC107589915,LOC107677752,LOC107718184,LOC107693747 coding upstream 187724 9648808 ~ 9651247 (-)
tpra tpra,LOC107693743,LOC107722541,LOC107718142,LOC107589873,LOC107677758 coding upstream 220889 9681973 ~ 9702207 (-)
pdca pdca,LOC107594646,LOC107722648,LOC107693745,LOC107589870,LOC107677764 coding upstream 249709 9710793 ~ 9713560 (-)
ptgs2a ptgs2a,LOC107594645,LOC107722606,LOC107693741,LOC107677761,LOC107718138,LOC107589869 coding upstream 265563 9726647 ~ 9729940 (-)
G10569 NA non-coding downstream 6237 9450560 ~ 9450926 (-)
G10518 ptbp2,ptbp2b,LOC107570490,LOC107594658 non-coding downstream 125920 9327802 ~ 9331243 (-)
G10438 NA non-coding downstream 513570 8943099 ~ 8943593 (-)
G10432 NA non-coding downstream 527080 8929490 ~ 8930083 (-)
G10400 NA non-coding downstream 658177 8798582 ~ 8798986 (-)
G10621 NA non-coding upstream 144554 9605638 ~ 9606195 (-)
G10708 NA non-coding upstream 287303 9748387 ~ 9748740 (-)
G10773 NA non-coding upstream 465021 9926105 ~ 9927837 (-)
G10812 NA non-coding upstream 585734 10046818 ~ 10047373 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding upstream 697494 10158578 ~ 10160064 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other downstream 247122 9182056 ~ 9210041 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 1029259 8403327 ~ 8427904 (-)
G10213 NA other downstream 1349375 8106856 ~ 8107788 (-)
G10196 NA other downstream 1385329 8070776 ~ 8071834 (-)
G10178 NA other downstream 1672009 7784468 ~ 7785154 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other upstream 30479 9491563 ~ 9519781 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other upstream 145239 9606323 ~ 9618473 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 619098 10080182 ~ 10095857 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 658889 10119973 ~ 10139585 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other upstream 679851 10140935 ~ 10143709 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_05617072_05627369 NA misc CI01000004 null 5616644 ~ 5628289 (-)
grasscarp (Ctenopharyngodon idella) G238021 NA non-coding CI01000055 null 978945 ~ 979179 (+)
rainbow trout (Oncorhynchus mykiss) LOC110508849 NA misc NC_048592.1 CM023246.2 28398505 ~ 28403893 (-)
striped catfish (Pangasianodon hypophthalmus) LOC113539374 NA non-coding NC_047608.1 CM018554.1 18131157 ~ 18136609 (+)