Item | Value |
---|---|
gene id | G334 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000000 |
NCBI id | null |
chromosome length | 19091038 |
location | 617513 ~ 617792 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU407 | True | 280 | lncRNA | 0.37 | 1 | 617513 | 617792 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000000_00588173_00605818 | NA | coding | upstream | 11317 | 587868 ~ 606196 (+) |
CI01000000_00264365_00265448 | NA | coding | upstream | 352007 | 264365 ~ 265506 (+) |
CI01000000_00260299_00262433 | NA | coding | upstream | 353989 | 260299 ~ 263524 (+) |
CI01000000_00252240_00259416 | SPON2B, SPON2 | coding | upstream | 357665 | 252240 ~ 259848 (+) |
CI01000000_00127682_00128077 | NA | coding | upstream | 489436 | 123554 ~ 128077 (+) |
CI01000000_00639336_00658655 | NA | coding | downstream | 21360 | 639152 ~ 659048 (+) |
CI01000000_00678887_00679319 | NA | coding | downstream | 60920 | 678712 ~ 680447 (+) |
CI01000000_00753279_00782484 | PPP3CA, PPP3CB | coding | downstream | 135487 | 753279 ~ 782484 (+) |
CI01000000_00814932_00820795 | NA | coding | downstream | 197140 | 814932 ~ 820875 (+) |
CI01000000_00825374_00827067 | NA | coding | downstream | 207453 | 825245 ~ 827766 (+) |
G333 | NA | non-coding | upstream | 188 | 617046 ~ 617325 (+) |
G330 | NA | non-coding | upstream | 6971 | 610342 ~ 610542 (+) |
G318 | NA | non-coding | upstream | 43204 | 574063 ~ 574309 (+) |
G317 | NA | non-coding | upstream | 44115 | 573092 ~ 573398 (+) |
G316 | NA | non-coding | upstream | 44559 | 572537 ~ 572954 (+) |
G336 | NA | non-coding | downstream | 9817 | 627609 ~ 627873 (+) |
G339 | NA | non-coding | downstream | 22103 | 639895 ~ 640185 (+) |
G344 | NA | non-coding | downstream | 27752 | 645544 ~ 645774 (+) |
G243 | NA | non-coding | downstream | 28933 | 646725 ~ 691607 (+) |
G252 | NA | other | upstream | 110441 | 503209 ~ 507072 (+) |
G350 | NA | other | downstream | 54050 | 671842 ~ 676937 (+) |
G435 | NA | other | downstream | 807329 | 1425121 ~ 1432854 (+) |
G579 | NA | other | downstream | 1197661 | 1767917 ~ 1908808 (+) |
G2774 | NA | other | downstream | 3835986 | 4453778 ~ 4454232 (+) |
G2850 | NA | other | downstream | 4108194 | 4725986 ~ 4726482 (+) |